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AT1G80760.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NOD26-like intrinsic protein 6;1
Curator
Summary (TAIR10)
Encodes a protein with boron transporter activity. It helps to preferentially direct boron to young developing tissues in the shoot, such as immature leaves, under low boron conditions. This boron channel appears to be impermeable to water, unlike the closely related NIP5;1 boron transporter. This protein also allows the transport of glycerol, urea, and formimide but not larger uncharged solutes such as arabitol and sucrose when it is expressed heterologously.
Computational
Description (TAIR10)
NOD26-like intrinsic protein 6;1 (NIP6;1); CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: NOD26-like intrinsic protein 5;1 (TAIR:AT4G10380.1); Has 10266 Blast hits to 10221 proteins in 2131 species: Archae - 103; Bacteria - 5136; Metazoa - 1354; Fungi - 440; Plants - 2031; Viruses - 2; Other Eukaryotes - 1200 (source: NCBI BLink).
Protein Annotations
BioGrid:29633eggNOG:COG0580eggNOG:KOG0223EMBL:AC011713
EMBL:BT020229EMBL:BT021924EMBL:CP002684EnsemblPlants:AT1G80760
EnsemblPlants:AT1G80760.1entrez:844415Gene3D:1.20.1080.10GeneID:844415
Genevisible:Q9SAI4GO:GO:0005886GO:GO:0006833GO:GO:0015168
GO:GO:0015204GO:GO:0015250GO:GO:0015254GO:GO:0015793
GO:GO:0016021GO:GO:0035445GO:GO:0046713GO:GO:0046715
GO:GO:0071918GO:GO:0080029Gramene:AT1G80760.1hmmpanther:PTHR19139
hmmpanther:PTHR19139:SF170HOGENOM:HOG000288286InParanoid:Q9SAI4InterPro:IPR000425
InterPro:IPR022357InterPro:IPR023271KEGG:ath:AT1G80760KO:K09874
OMA:YIGAQVMPANTHER:PTHR19139PaxDb:Q9SAI4Pfam:PF00230
Pfam:Q9SAI4PhylomeDB:Q9SAI4PIR:B96840PRINTS:PR00783
PRO:PR:Q9SAI4PROSITE:PS00221ProteinModelPortal:Q9SAI4Proteomes:UP000006548
RefSeq:NP_178191.1scanprosite:PS00221SMR:Q9SAI4STRING:3702.AT1G80760.1
SUPFAM:SSF81338TAIR:AT1G80760tair10-symbols:NIP6tair10-symbols:NIP6;1
tair10-symbols:NLM7TCDB:1.A.8.12.9TMHMM:TMhelixUniGene:At.33879
UniGene:At.62180UniProt:Q9SAI4
Coordinates (TAIR10) chr1:-:30350640..30352015
Molecular Weight (calculated) 31846.80 Da
IEP (calculated) 8.33
GRAVY (calculated) 0.37
Length 305 amino acids
Sequence (TAIR10)
(BLAST)
001: MDHEEIPSTP STPATTPGTP GAPLFGGFEG KRNGHNGRYT PKSLLKSCKC FSVDNEWALE DGRLPPVTCS LPPPNVSLYR KLGAEFVGTL ILIFAGTATA
101: IVNQKTDGAE TLIGCAASAG LAVMIVILST GHISGAHLNP AVTIAFAALK HFPWKHVPVY IGAQVMASVS AAFALKAVFE PTMSGGVTVP TVGLSQAFAL
201: EFIISFNLMF VVTAVATDTR AVGELAGIAV GATVMLNILI AGPATSASMN PVRTLGPAIA ANNYRAIWVY LTAPILGALI GAGTYTIVKL PEEDEAPKER
301: RSFRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)