AT1G51440.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plastid 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : alpha/beta-Hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: galactolipase activity, triglyceride lipase activity, phospholipase A1 activity; INVOLVED IN: lipid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G30550.2); Has 1155 Blast hits to 1147 proteins in 234 species: Archae - 0; Bacteria - 238; Metazoa - 19; Fungi - 161; Plants - 563; Viruses - 5; Other Eukaryotes - 169 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:+:19070971..19072554 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 60324.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.62 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.54 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 527 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MASLSLPITL KNPRFFSSSP QNIFKTQPQT LVLTTKFKTC SIICSSSCTS ISSSTTQQKQ SNKQTHVSDN KREEKAEEEE EEKEVSLREI WREVQGCNNW 101: EGQLDPMNNH LRREIIRYGE FAQACYDSFD FDPHSKYCGS CKYHPSDFFL NLDLHLHKGY TITRYLYATS NINLPNFFQK SKLSSIWSQH ANWMGFVAVA 201: TDEEEVSRLG RRDIVIAWRG TVTYLEWIYD LKDILCSANF GDDPSIKIEL GFHDLYTKKE DSCKFSSFSA REQVLAEVKR LIEYYGTEEE GHKTSITVTG 301: HSLGASLALV SAYDIAELNL NHVPENNYKI PITVFSFSGP RVGNLRFKER CDELGVKVLR VVNVHDKVPS VPGIFTNEKF QFQKYVEEKT SFPWSYAHVG 401: VELALDHKKS PFLKPTKDLG CAHNLEALLH LVDGYHGKDE EAEKRFCLVT KRDIALVNKS CDFLRGEYHV PPCWRQDENK GMVKNGDGQW VLPDRPLLEP 501: HGPEDIAHHL QQVLGKVNDD NFKPTTT |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)