AT2G37900.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.510 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT3G53960.1); Has 7031 Blast hits to 6882 proteins in 1319 species: Archae - 0; Bacteria - 3384; Metazoa - 508; Fungi - 445; Plants - 2220; Viruses - 0; Other Eukaryotes - 474 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:15864396..15866408 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 64310.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.04 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.36 | ||||||||||||||||||||||||||||||||||||||||
| Length | 575 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEHKNIGAEV LQDTYDDQQK WVLDSSLDSR GRVPLRARTG AWRAALFIIA IEFSERLSYF GLATNLVVYL TTILNQDLKM AIRNVNYWSG VTTLMPLLGG 101: FIADAYLGRY ATVLVATTIY LMGLVLLTMS WFIPGLKPCH QEVCVEPRKA HEVAFFIAIY LISIGTGGHK PSLESFGADQ FDDDHVEERK MKMSFFNWWN 201: VSLCAGILTA VTAVAYIEDR VGWGVAGIIL TVVMAISLII FFIGKPFYRY RTPSGSPLTP ILQVFVAAIA KRNLPYPSDP SLLHEVSKTE FTSGRLLCHT 301: EHLKFLDKAA IIEDKNPLAL EKQSPWRLLT LTKVEETKLI INVIPIWFST LAFGICATQA STFFIKQAIT MDRHIGGFTV PPASMFTLTA LTLIISLTVY 401: EKLLVPLLRS ITRNQRGINI LQRIGTGMIF SLITMIIAAL VEKQRLDRTN NNKPMSVIWL APQFMVIGFA DAFTLVGLQE YFYHQVPDSM RSLGIAFYLS 501: VIGAASFLNN LLITAVDTLA ENFSGKSWFG KDLNSSRLDR FYWFLAGVIA ANICVFVIVA KRCPYKSVQP SQGLS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)