AT3G53960.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.968 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT2G37900.1); Has 6025 Blast hits to 5886 proteins in 1158 species: Archae - 0; Bacteria - 2442; Metazoa - 501; Fungi - 426; Plants - 2213; Viruses - 0; Other Eukaryotes - 443 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:19978306..19980886 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 67066.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.31 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.26 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 602 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEHNKVDTEP QDSYDDQQKW VLDSSTDSRG EIPLRAQTGA WRAALFIIGI EFSERLSYFG ISTNLVVYLT TILHQDLKMA VKNTNYWSGV TTLMPLLGGF 101: VADAYLGRYG TVLLATTIYL MGLILLTLSW FIPGLKACHE DMCVEPRKAH EIAFFIAIYL ISIGTGGHKP SLESFGADQF EDGHPEERKM KMSYFNWWNA 201: GLCAGILTAV TVIVYIEDRI GWGVASIILT IVMATSFFIF RIGKPFYRYR APSGSPLTPM LQVFVAAIAK RNLPCPSDSS LLHELTNEEY TKGRLLSSSK 301: NLKFLDKAAV IEDRNENTKA EKQSPWRLAT VTKVEEVKLL INMIPIWFFT LAFGVCATQS STLFIKQAII MDRHITGTSF IVPPASLFSL IALSIIITVT 401: IYEKLLVPLL RRATGNERGI SILQRIGVGM VFSLFAMIIA ALIEKKRLDY AKEHHMNKTM TLSAIWLAPQ FLVLGVADAF TLVGLQEYFY DQVPDSMRSL 501: GIAFYLSVLG AASFVNNLLI TVSDHLAEEI SGKGWFGKDL NSSRLDRFYW MLAALTAANI CCFVIVAMRY TYKTVQPSLA VVADGGDDVE TATGTNNTSK 601: FT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)