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AT2G30540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.802
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Thioredoxin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Thioredoxin superfamily protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Glutaredoxin (InterPro:IPR002109), Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Glutaredoxin family protein (TAIR:AT1G06830.1); Has 1108 Blast hits to 1104 proteins in 175 species: Archae - 0; Bacteria - 32; Metazoa - 218; Fungi - 87; Plants - 737; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).
Protein Annotations
BioGrid:2952eggNOG:COG0695eggNOG:KOG1752EMBL:AY087910
EMBL:AY127010EMBL:BT001028EMBL:CP002685EMBL:FJ611907
EMBL:U93215EnsemblPlants:AT2G30540EnsemblPlants:AT2G30540.1entrez:817603
Gene3D:3.40.30.10GeneID:817603Genevisible:O04341GO:GO:0005737
GO:GO:0009055GO:GO:0015035GO:GO:0045454GO:GO:0046872
GO:GO:0051537Gramene:AT2G30540.1hmmpanther:PTHR10168hmmpanther:PTHR10168:SF57
HOGENOM:HOG000095204InParanoid:O04341IntAct:O04341InterPro:IPR002109
InterPro:IPR011905InterPro:IPR012336KEGG:ath:AT2G30540OMA:FPAIFIG
PaxDb:O04341Pfam:O04341Pfam:PF00462Pfscan:PS51354
PhylomeDB:O04341PIR:F84709PRIDE:O04341PRO:PR:O04341
PROSITE:PS51354ProteinModelPortal:O04341Proteomes:UP000006548RefSeq:NP_180612.1
SMR:O04341STRING:3702.AT2G30540.1SUPFAM:SSF52833TAIR:AT2G30540
TIGRfam:TIGR02189TIGRFAMs:TIGR02189UniGene:At.38347UniGene:At.70471
UniProt:O04341
Coordinates (TAIR10) chr2:-:13011259..13011567
Molecular Weight (calculated) 11080.70 Da
IEP (calculated) 7.34
GRAVY (calculated) 0.27
Length 102 amino acids
Sequence (TAIR10)
(BLAST)
001: MDKVVRMSSE KGVVIFSKSS CCMSYAVQVL FQDLGVHPTV HEIDKDPECR EIEKALMRLG CSTPVPAIFV GGKLIGSTNE VMSLHLSGSL VPLVKPFQAN
101: LC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)