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AT1G11080.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : serine carboxypeptidase-like 31
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
serine carboxypeptidase-like 31 (scpl31); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 30 (TAIR:AT4G15100.1); Has 3569 Blast hits to 3515 proteins in 359 species: Archae - 0; Bacteria - 168; Metazoa - 632; Fungi - 857; Plants - 1467; Viruses - 0; Other Eukaryotes - 445 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G11080-MONOMERBioCyc:ARA:GQT-2633-MONOMEREC:3.4.16.-eggNOG:COG2939
eggNOG:KOG1282EMBL:BT003972EMBL:BT030381EMBL:CP002684
EMBL:U95973EnsemblPlants:AT1G11080EnsemblPlants:AT1G11080.1entrez:837649
ESTHER:arath-SCP31ExpressionAtlas:O04084Gene3D:3.40.50.1820GeneID:837649
Genevisible:O04084GO:GO:0004185GO:GO:0005576hmmpanther:PTHR11802
hmmpanther:PTHR11802:SF90HOGENOM:HOG000198295InParanoid:O04084InterPro:IPR001563
InterPro:IPR018202InterPro:IPR029058MEROPS:S10.A36PANTHER:PTHR11802
PaxDb:O04084Pfam:O04084Pfam:PF00450PIR:G86244
PRIDE:O04084PRINTS:PR00724PRO:PR:O04084PROSITE:PS00131
ProteinModelPortal:O04084Proteomes:UP000006548RefSeq:NP_172575.2scanprosite:PS00131
SMR:O04084STRING:3702.AT1G11080.2SUPFAM:SSF53474TAIR:AT1G11080
tair10-symbols:scpl31TMHMM:TMhelixUniGene:At.27495UniProt:O04084
Coordinates (TAIR10) chr1:-:3694917..3697759
Molecular Weight (calculated) 55447.80 Da
IEP (calculated) 5.30
GRAVY (calculated) -0.37
Length 492 amino acids
Sequence (TAIR10)
(BLAST)
001: MDNYQTKNIS NLLTSLCFTT LLILAPVVIC TRQHRFDSPK RSLLANEQDL VTGLPGQPDV SFRHYAGYVP VDESNGRAMF YWFFEAMDLP KEKPLVLWLN
101: GGPGCSSVGY GATQEIGPFL VDTNGNGLNF NPYAWNKEAN MLFLESPVGV GFSYSNTSSD YQKLGDDFTA RDAYTFLCNW FEKFPEHKEN TFYIAGESYA
201: GKYVPELAEV VYDNNNNNKK NGSSFHINLK GILLGNPETS DAEDWRGWVD YAWSHAVISD ETHRIITRTC NFSSDNTWSN DECNEAVAEV LKQYHEIDIY
301: SIYTSVCIGD SARSSYFDSA QFKTNSRISS KRMPPRLMGG YDPCLDDYAR VFYNRADVQK SLHASDGVNL KNWSICNMEI FNNWTGSNPS VLPIYEKLIA
401: GGLRIWVYSG DTDGRVPVLA TRYSLNALEL PIKTAWRPWY HEKQVSGWLQ EYEGLTFATF RGAGHAVPCF KPSSSLAFFS AFLSGVPPPP SR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)