suba logo
AT4G30460.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.892
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glycine-rich protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; Has 195201 Blast hits to 50354 proteins in 2481 species: Archae - 397; Bacteria - 59837; Metazoa - 58170; Fungi - 13503; Plants - 16798; Viruses - 2787; Other Eukaryotes - 43709 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JU0KeggNOG:ENOG41107BSEMBL:AL161577EMBL:AY093075
EMBL:BT000091EMBL:CP002687EnsemblPlants:AT4G30460EnsemblPlants:AT4G30460.1
entrez:829169GeneID:829169Gramene:AT4G30460.1hmmpanther:PTHR38934
KEGG:ath:AT4G30460OMA:MSDGAGKPIR:C85356Proteomes:UP000006548
RefSeq:NP_194775.1TAIR:AT4G30460TMHMM:TMhelixUniGene:At.31833
UniProt:Q9M0B4
Coordinates (TAIR10) chr4:-:14889246..14889734
Molecular Weight (calculated) 13739.20 Da
IEP (calculated) 4.94
GRAVY (calculated) -0.27
Length 162 amino acids
Sequence (TAIR10)
(BLAST)
001: MSDLNNSSSL ILITLILATS VLVSESRVAR KDLGLDLGGI GAGIGIGIGI GGGGSGSGAG AGSGSGGGGS SSSSSSSSSS SSSSGGGGGD AGSEAGSYAG
101: SHAGSGSGGR SGSGRGRGSG GGGGHGGGGG GGGGRGGGGG SGNGEGYGEG GGYGGGYGGG DD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)