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AT2G36120.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glycine-rich protein family
Curator
Summary (TAIR10)
Encodes a glycine rich protein that is involved in leaf vascular patterning. dot1 mutants have an aberrant open-class venation pattern in leaves and cotyledons, as well as several other leaf development defects.
Computational
Description (TAIR10)
DEFECTIVELY ORGANIZED TRIBUTARIES 1 (DOT1); INVOLVED IN: cotyledon vascular tissue pattern formation, phloem or xylem histogenesis, leaf vascular tissue pattern formation, leaf development; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage; Has 433761 Blast hits to 69211 proteins in 2973 species: Archae - 1140; Bacteria - 107056; Metazoa - 166195; Fungi - 29774; Plants - 43479; Viruses - 5777; Other Eukaryotes - 80340 (source: NCBI BLink).
Protein Annotations
EMBL:AC007135EMBL:AY136328EMBL:BT000113EMBL:CP002685
EnsemblPlants:AT2G36120EnsemblPlants:AT2G36120.1entrez:3768574GeneID:3768574
Genevisible:Q9SIH2GO:GO:0005576GO:GO:0010087GO:GO:0010305
GO:GO:0010588GO:GO:0048366Gramene:AT2G36120.1KEGG:ath:AT2G36120
OMA:GGTYDQGPaxDb:Q9SIH2Pfam:Q9SIH2PIR:B84777
PRO:PR:Q9SIH2ProteinModelPortal:Q9SIH2Proteomes:UP000006548RefSeq:NP_181156.1
TAIR:AT2G36120tair10-symbols:DOT1UniGene:At.22495UniGene:At.46958
UniGene:At.67701UniGene:At.71580UniProt:Q9SIH2
Coordinates (TAIR10) chr2:+:15165468..15166235
Molecular Weight (calculated) 19995.10 Da
IEP (calculated) 6.15
GRAVY (calculated) -0.25
Length 255 amino acids
Sequence (TAIR10)
(BLAST)
001: MANHKNLFFL CFLIGLGLCS ARRALLSSSE SEAEVAAYGV NSGLSAGLGV GIGGGPGGGS GYGGGSGEGG GAGGHGEGHI GGGGGGGHGG GAGGGGGGGP
101: GGGYGGGSGE GGGAGYGGGE AGGHGGGGGG GAGGGGGGGG GAHGGGYGGG QGAGAGGGYG GGGAGGHGGG GGGGNGGGGG GGSGEGGAHG GGYGAGGGAG
201: EGYGGGAGAG GHGGGGGGGG GSGGGGGGGG GYAAASGYGH GGGAGGGEGS GGYVP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)