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AT3G23450.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; Has 694543 Blast hits to 47111 proteins in 2535 species: Archae - 1794; Bacteria - 163056; Metazoa - 258989; Fungi - 49151; Plants - 70496; Viruses - 8919; Other Eukaryotes - 142138 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JWEIeggNOG:ENOG411050BEMBL:AB015474EMBL:CP002686
EnsemblPlants:AT3G23450EnsemblPlants:AT3G23450.1entrez:3768908GeneID:3768908
Gramene:AT3G23450.1hmmpanther:PTHR39110KEGG:ath:AT3G23450Proteomes:UP000006548
RefSeq:NP_188987.1STRING:3702.AT3G23450.1TAIR:AT3G23450TMHMM:TMhelix
UniGene:At.47237UniProt:Q9LW52
Coordinates (TAIR10) chr3:+:8410483..8411841
Molecular Weight (calculated) 34868.80 Da
IEP (calculated) 11.59
GRAVY (calculated) 0.15
Length 452 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRLVSGATL LALLCFHVFV VNVVARDVSS GRDEDEKTLV GGGKGGGFGG GFGGGAGGGV GGGAGGGFGG GAGGGFGGGG GGGGGGGGGG GGGFGGGGGF
101: GGGHGGGVGG GVGGGHGGGV GGGFGKGGGI GGGIGKGGGV GGGIGKGGGI GGGIGKGGGV GGGIGKGGGI GGGIGKGGGI GGGIGKGGGI GGGIGKGGGI
201: GGGIGKGGGV GGGFGKGGGV GGGIGKGGGV GGGFGKGGGV GGGIGKGGGI GGGIGKGGGI GGGIGKGGGI GGGIGKGGGI GGGIGKGGGI GGGIGKGGGI
301: GGGIGKGGGI GGGIGKGGGI GGGGGFGKGG GIGGGIGKGG GIGGGGGFGK GGGIGGGIGK GGGIGGGFGK GGGIGGGIGG GGGFGGGGGF GKGGGIGGGI
401: GKGGGFGGGG GFGKGGGIGG GGGFGKGGGF GGGGFGGGGG GGGGGGGGIG HH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)