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AT4G16790.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.949
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid
  • PMID:21533090 (2011): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : hydroxyproline-rich glycoprotein family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
hydroxyproline-rich glycoprotein family protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60380.1); Has 8255 Blast hits to 6141 proteins in 463 species: Archae - 4; Bacteria - 400; Metazoa - 3327; Fungi - 1159; Plants - 2082; Viruses - 247; Other Eukaryotes - 1036 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVHEeggNOG:ENOG410YMK4EMBL:AK226346EMBL:AL161544
EMBL:AY072022EMBL:AY149947EMBL:CP002687EMBL:Z97342
EnsemblPlants:AT4G16790EnsemblPlants:AT4G16790.1entrez:827385GeneID:827385
GO:GO:0016021Gramene:AT4G16790.1hmmpanther:PTHR34059hmmpanther:PTHR34059:SF4
InterPro:IPR008480KEGG:ath:AT4G16790OMA:IPEVETRPfam:PF05553
PhylomeDB:Q9SUK6PIR:B85187Proteomes:UP000006548RefSeq:NP_193412.1
TAIR:AT4G16790TMHMM:TMhelixUniGene:At.4440UniProt:Q9SUK6
Coordinates (TAIR10) chr4:-:9451747..9453168
Molecular Weight (calculated) 53300.20 Da
IEP (calculated) 9.88
GRAVY (calculated) -0.97
Length 473 amino acids
Sequence (TAIR10)
(BLAST)
001: MVEARSLKKP IQLGNKEDQN PRKFYSRFIF KALILTVLCA VVPVFLSQTP ELANQTRLLE LLHLVFVGIA VSYGLFSRRN YDGGGGGGTS NSDHNKADHS
101: NNNSHSYVPK ILEVSSVFNV GHESESEPSD DSSGDQRKFQ TWKNKYHMKI PEVETRFVDR VSSENREKPL LLPVRSLNYS RVSDSSGDNS GRWEKVRSKR
201: ELLKTLGDDN SDVLPSPIPW RSRSSSSSSS SSKEVESLPS VKNLTTVESQ PLIKNLTPPS SFSSPRKSNP IPNLASEFHP SPPPPPPPPP PLPAFYNSSS
301: RKDHPGIYRV ERRESSVHKT KFAGGEFHPP PPPPPPPPVE YYKSPPTKFR LSNERRKSSE QKMKRNAPKK VWWSDPIVES KEQDTEKNDQ RSNLGSKAVE
401: ESENGEQRRG ENEIHDEVEK KIVEEEGVSE INNGSDVDKK ADEFIAKFRE QIRLQRIESI KRSTNKISAN SSR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)