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AT1G76800.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
ASURE: vacuole
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Vacuolar iron transporter (VIT) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Vacuolar iron transporter (VIT) family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF125, transmembrane (InterPro:IPR008217); BEST Arabidopsis thaliana protein match is: Vacuolar iron transporter (VIT) family protein (TAIR:AT3G43660.1); Has 1790 Blast hits to 1779 proteins in 610 species: Archae - 82; Bacteria - 1205; Metazoa - 0; Fungi - 63; Plants - 209; Viruses - 0; Other Eukaryotes - 231 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1814eggNOG:KOG4473EMBL:AC010718EMBL:BT014942
EMBL:BT015634EMBL:CP002684EnsemblPlants:AT1G76800EnsemblPlants:AT1G76800.1
entrez:844014GeneID:844014Genevisible:Q9SRD3GO:GO:0005381
GO:GO:0005384GO:GO:0005774GO:GO:0006880GO:GO:0010039
GO:GO:0016020GO:GO:0016021GO:GO:0030026GO:GO:0034755
GO:GO:0071281GO:GO:0071369GO:GO:0071421GO:GO:0071732
Gramene:AT1G76800.1hmmpanther:PTHR31851hmmpanther:PTHR31851:SF15HOGENOM:HOG000096548
InParanoid:Q9SRD3InterPro:IPR008217KEGG:ath:AT1G76800ncoils:Coil
OMA:ADHEDIFPaxDb:Q9SRD3Pfam:PF01988Pfam:Q9SRD3
PhylomeDB:Q9SRD3PIR:F96796PRO:PR:Q9SRD3ProteinModelPortal:Q9SRD3
Proteomes:UP000006548RefSeq:NP_177806.1STRING:3702.AT1G76800.1TAIR:AT1G76800
TCDB:2.A.89.3.4TMHMM:TMhelixUniGene:At.34609UniProt:Q9SRD3
Coordinates (TAIR10) chr1:+:28829345..28829935
Molecular Weight (calculated) 20586.30 Da
IEP (calculated) 7.35
GRAVY (calculated) 0.54
Length 196 amino acids
Sequence (TAIR10)
(BLAST)
001: MDQSGSNTNM DIEKESTTFD YSKRSQWLRA AVLGANDGLV STASLMMGVG AVKHDVKAMI LSGFAGMVAG ACSMAIGEFV SVYSQYDIEV AQMERDSVEI
101: EKEKLPSPMQ AAAASALAFS AGAIVPLLAA AFVKEYKMRI ISVVVAVTVA LMVFGWLGAA LGKAPAVRSS ARVLFGGWLA MAVTFGLTKL IGLYGL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)