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AT5G49630.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.979
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : amino acid permease 6
Curator
Summary (TAIR10)
Is a high affinity amino acid transporter capable of transporting aspartate and tryptophan. May be involved in the amino acid uptake from xylem.
Computational
Description (TAIR10)
amino acid permease 6 (AAP6); FUNCTIONS IN: acidic amino acid transmembrane transporter activity, neutral amino acid transmembrane transporter activity, amino acid transmembrane transporter activity; INVOLVED IN: response to water deprivation, response to salt stress, aspartate transport, tryptophan transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: amino acid permease 1 (TAIR:AT1G58360.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:20271eggNOG:COG0814eggNOG:KOG1303EMBL:AB025627
EMBL:AK229102EMBL:CP002688EMBL:X95736EnsemblPlants:AT5G49630
EnsemblPlants:AT5G49630.1entrez:835025GeneID:835025Genevisible:P92934
GO:GO:0005886GO:GO:0015172GO:GO:0015175GO:GO:0015293
GO:GO:0015804GO:GO:0015810GO:GO:0015827GO:GO:0016021
Gramene:AT5G49630.1hmmpanther:PTHR22950hmmpanther:PTHR22950:SF278HOGENOM:HOG000238530
InParanoid:P92934InterPro:IPR013057KEGG:ath:AT5G49630OMA:MGAIKRS
PaxDb:P92934Pfam:P92934Pfam:PF01490PhylomeDB:P92934
PIR:T50691PRIDE:P92934PRO:PR:P92934ProteinModelPortal:P92934
Proteomes:UP000006548RefSeq:NP_199774.1SABIO-RK:P92934STRING:3702.AT5G49630.1
SwissPalm:P92934TAIR:AT5G49630tair10-symbols:AAP6TCDB:2.A.18.2.4
TMHMM:TMhelixUniGene:At.163UniProt:P92934
Coordinates (TAIR10) chr5:-:20142681..20146441
Molecular Weight (calculated) 53023.60 Da
IEP (calculated) 8.62
GRAVY (calculated) 0.37
Length 481 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKKKSMFVE QSFPEHEIGD TNKNFDEDGR DKRTGTWMTG SAHIITAVIG SGVLSLAWAI AQLGWVAGPA VLMAFSFITY FTSTMLADCY RSPDPVTGKR
101: NYTYMEVVRS YLGGRKVQLC GLAQYGNLIG ITIGYTITAS ISMVAVKRSN CFHKNGHNVK CATSNTPFMI IFAIIQIILS QIPNFHNLSW LSILAAVMSF
201: CYASIGVGLS IAKAAGGGEH VRTTLTGVTV GIDVSGAEKI WRTFQAIGDI AFAYAYSTVL IEIQDTLKAG PPSENKAMKR ASLVGVSTTT FFYMLCGCVG
301: YAAFGNDAPG NFLTGFGFYE PFWLIDFANV CIAVHLIGAY QVFCQPIFQF VESQSAKRWP DNKFITGEYK IHVPCCGDFS INFLRLVWRT SYVVVTAVVA
401: MIFPFFNDFL GLIGAASFWP LTVYFPIEMH IAQKKIPKFS FTWTWLKILS WTCFIVSLVA AAGSVQGLIQ SLKDFKPFQA P
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)