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AT1G06170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G31220.1); Has 1258 Blast hits to 1258 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 1252; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
BioGrid:22368eggNOG:ENOG410IK17eggNOG:ENOG4111NJYEMBL:AC025290
EMBL:AF488619EMBL:BT004262EMBL:CP002684EnsemblPlants:AT1G06170
EnsemblPlants:AT1G06170.1EnsemblPlants:AT1G06170.2entrez:837126Gene3D:4.10.280.10
GeneID:837126Genevisible:Q9LND0GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0009555
GO:GO:0048658GO:GO:0052543Gramene:AT1G06170.1Gramene:AT1G06170.2
hmmpanther:PTHR11514hmmpanther:PTHR11514:SF29HOGENOM:HOG000083787InParanoid:Q9LND0
InterPro:IPR011598KEGG:ath:AT1G06170OMA:FEEIGCFPaxDb:Q9LND0
Pfam:PF00010Pfam:Q9LND0Pfscan:PS50888PhylomeDB:Q9LND0
PIR:C86197PRIDE:Q9LND0PRO:PR:Q9LND0PROSITE:PS50888
ProteinModelPortal:Q9LND0Proteomes:UP000006548RefSeq:NP_172107.1RefSeq:NP_973769.1
SMART:SM00353SMR:Q9LND0STRING:3702.AT1G06170.1SUPFAM:SSF47459
TAIR:AT1G06170UniGene:At.42353UniProt:Q9LND0
Coordinates (TAIR10) chr1:-:1885146..1886564
Molecular Weight (calculated) 47035.20 Da
IEP (calculated) 5.73
GRAVY (calculated) -0.57
Length 420 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGGGMFEEI GCFDPNAPAE MTAESSFSPS EPPPTITVIG SNSNSNCSLE DLSAFHLSPQ DSSLPASASA YAHQLHINAT PNCDHQFQSS MHQTLQDPSY
101: AQQSNHWDNG YQDFVNLGPN HTTPDLLSLL QLPRSSLPPF ANPSIQDIIM TTSSSVAAYD PLFHLNFPLQ PPNGSFMGVD QDQTETNQGV NLMYDEENNN
201: LDDGLNRKGR GSKKRKIFPT ERERRVHFKD RFGDLKNLIP NPTKNDRASI VGEAIDYIKE LLRTIDEFKL LVEKKRVKQR NREGDDVVDE NFKAQSEVVE
301: QCLINKKNNA LRCSWLKRKS KFTDVDVRII DDEVTIKIVQ KKKINCLLFV SKVVDQLELD LHHVAGAQIG EHHSFLFNAK ISEGSSVYAS AIADRVMEVL
401: KKQYMEALSA NNGYHCYSSD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)