AT1G06170.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G31220.1); Has 1258 Blast hits to 1258 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 1252; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr1:-:1885146..1886564 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 47035.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.73 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.57 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 420 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MGGGGMFEEI GCFDPNAPAE MTAESSFSPS EPPPTITVIG SNSNSNCSLE DLSAFHLSPQ DSSLPASASA YAHQLHINAT PNCDHQFQSS MHQTLQDPSY 101: AQQSNHWDNG YQDFVNLGPN HTTPDLLSLL QLPRSSLPPF ANPSIQDIIM TTSSSVAAYD PLFHLNFPLQ PPNGSFMGVD QDQTETNQGV NLMYDEENNN 201: LDDGLNRKGR GSKKRKIFPT ERERRVHFKD RFGDLKNLIP NPTKNDRASI VGEAIDYIKE LLRTIDEFKL LVEKKRVKQR NREGDDVVDE NFKAQSEVVE 301: QCLINKKNNA LRCSWLKRKS KFTDVDVRII DDEVTIKIVQ KKKINCLLFV SKVVDQLELD LHHVAGAQIG EHHSFLFNAK ISEGSSVYAS AIADRVMEVL 401: KKQYMEALSA NNGYHCYSSD |
||||||||||||||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)