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AT2G05940.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein kinase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G35580.1); Has 113425 Blast hits to 112177 proteins in 3510 species: Archae - 99; Bacteria - 13130; Metazoa - 41743; Fungi - 9248; Plants - 32526; Viruses - 361; Other Eukaryotes - 16318 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G05940-MONOMEReggNOG:COG0515eggNOG:KOG1187EMBL:AC005970
EMBL:AY056245EMBL:AY113963EMBL:CP002685EnsemblPlants:AT2G05940
EnsemblPlants:AT2G05940.1entrez:815147GeneID:815147GO:GO:0004674
GO:GO:0005524GO:GO:0042742Gramene:AT2G05940.1hmmpanther:PTHR27001
hmmpanther:PTHR27001:SF123HOGENOM:HOG000116550InterPro:IPR000719InterPro:IPR001245
InterPro:IPR008271InterPro:IPR011009KEGG:ath:AT2G05940OMA:ENHRRTL
Pfam:PF07714Pfscan:PS50011PhylomeDB:Q9ZUF4PIR:C84473
PROSITE:PS00108PROSITE:PS50011Proteomes:UP000006548RefSeq:NP_178651.1
scanprosite:PS00108SMART:SM00220SMR:Q9ZUF4STRING:3702.AT2G05940.1
SUPFAM:SSF56112TAIR:AT2G05940UniGene:At.23011UniProt:Q9ZUF4
Coordinates (TAIR10) chr2:-:2287514..2289270
Molecular Weight (calculated) 51703.50 Da
IEP (calculated) 9.94
GRAVY (calculated) -0.64
Length 462 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVKKKVSWR SLIVGCLGDP ETLMASSKKP KRKNDVIKKQ SSFQRLSILD MSNPSSNTLS EDLSISLAGS DLHVFTLAEL KVITQSFSST NFLGEGGFGP
101: VHKGFIDDKL RPGLKAQPVA VKLLDLEGLQ GHREWLTEVM FLGQLKHKNL VKLIGYCCEE EHRTLVYEFM PRGSLENQLF RRYSASLPWS TRMKIAHGAA
201: TGLQFLHEAE NPVIYRDFKA SNILLDSDYT AKLSDFGLAK DGPEGDDTHV STRVMGTQGY AAPEYIMTGH LTARSDVYSF GVVLLELLTG RRSVDKKRSS
301: REQNLVDWAR PMLNDPRKLS RIMDPRLEGQ YSETGARKAA TLAYQCLSHR PKNRPCMSAV VSILNDLKDY NDIPMGTFTY TVPNTPDNKE DDGRVGNKPR
401: KSSHHHHHQQ QQSNHPRSSP SPTTKSPSPT AKSPRNSTEN HRRTLRNGVN SPLRSEAGGE RY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)