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AT4G01720.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : WRKY family transcription factor
Curator
Summary (TAIR10)
member of WRKY Transcription Factor; Group II-b
Computational
Description (TAIR10)
WRKY47; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY family transcription factor (TAIR:AT4G04450.1); Has 3605 Blast hits to 3148 proteins in 215 species: Archae - 2; Bacteria - 4; Metazoa - 47; Fungi - 10; Plants - 3482; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IE5ReggNOG:ENOG410YDVMEMBL:AK229522EMBL:BT029024
EnsemblPlants:AT4G01720EnsemblPlants:AT4G01720.1entrez:828001ExpressionAtlas:Q0WNC3
Gene3D:2.20.25.80GeneID:828001GO:GO:0003700GO:GO:0043565
Gramene:AT4G01720.1hmmpanther:PTHR31429hmmpanther:PTHR31429:SF6InterPro:IPR003657
KEGG:ath:AT4G01720ncoils:CoilOMA:REIAFLHPfam:PF03106
Pfam:Q9ZSI7Pfscan:PS50811PhylomeDB:Q0WNC3PROSITE:PS50811
RefSeq:NP_192081.1SMART:SM00774SMR:Q0WNC3STRING:3702.AT4G01720.1
SUPFAM:0050605SUPFAM:SSF118290TAIR:AT4G01720tair10-symbols:AtWRKY47
tair10-symbols:WRKY47UniGene:At.27833UniProt:Q0WNC3UniProt:Q9ZSI7
Coordinates (TAIR10) chr4:+:744949..748219
Molecular Weight (calculated) 53710.10 Da
IEP (calculated) 7.01
GRAVY (calculated) -0.83
Length 489 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEHIQDRRE IAFLHSGEFL HGDSDSKDHQ PNESPVERHH ESSIKEVDFF AAKSQPFDLG HVRTTTIVGS SGFNDGLGLV NSCHGTSSND GDDKTKTQIS
101: RLKLELERLH EENHKLKHLL DEVSESYNDL QRRVLLARQT QVEGLHHKQH EDVPQAGSSQ ALENRRPKDM NHETPATTLK RRSPDDVDGR DMHRGSPKTP
201: RIDQNKSTNH EEQQNPHDQL PYRKARVSVR ARSDATTVND GCQWRKYGQK MAKGNPCPRA YYRCTMAVGC PVRKQVQRCA EDTTILTTTY EGNHNHPLPP
301: SATAMAATTS AAAAMLLSGS SSSNLHQTLS SPSATSSSSF YHNFPYTSTI ATLSASAPFP TITLDLTNPP RPLQPPPQFL SQYGPAAFLP NANQIRSMNN
401: NNQQLLIPNL FGPQAPPREM VDSVRAAIAM DPNFTAALAA AISNIIGGGN NDNNNNTDIN DNKVDAKSGG SSNGDSPQLP QSCTTFSTN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)