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AT2G46150.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT1G64065.1); Has 262 Blast hits to 261 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 258; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IY17eggNOG:ENOG410YMTZEMBL:AC005397EMBL:AY102565
EMBL:AY649242EMBL:CP002685EnsemblPlants:AT2G46150EnsemblPlants:AT2G46150.1
entrez:819222GeneID:819222GO:GO:0005886GO:GO:0016021
Gramene:AT2G46150.1hmmpanther:PTHR31852hmmpanther:PTHR31852:SF6HOGENOM:HOG000237955
InterPro:IPR004864KEGG:ath:AT2G46150OMA:ASFRYSNPfam:PF03168
PhylomeDB:O82354PIR:C84899Proteomes:UP000006548RefSeq:NP_182138.1
SUPFAM:0051044SwissPalm:O82354TAIR:AT2G46150TMHMM:TMhelix
UniGene:At.36547UniProt:O82354
Coordinates (TAIR10) chr2:+:18961424..18962089
Molecular Weight (calculated) 24097.70 Da
IEP (calculated) 10.37
GRAVY (calculated) 0.02
Length 221 amino acids
Sequence (TAIR10)
(BLAST)
001: MADSEHVRPL APATILPVSD ESASNIKNTH RSRNRIKCSI CVTATSLILT TIVLTLVFTV FRVKDPIIKM NGVMVNGLDS VTGTNQVQLL GTNISMIVDV
101: SVKNPNTASF KYSNTTTDIY YKGTLVGEAH GLPGKARPHR TSRMNVTVDI MLDRILSDPG LGREISRSGL VNVWSYTRVG GKVKIMGIVK KHVTVKMNCT
201: MAVNITGQAI QDVDCKKKID L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)