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AT2G46160.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G61550.1); Has 8150 Blast hits to 8125 proteins in 272 species: Archae - 0; Bacteria - 0; Metazoa - 1983; Fungi - 463; Plants - 4772; Viruses - 48; Other Eukaryotes - 884 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AC005397EMBL:AY074641
EMBL:CP002685EnsemblPlants:AT2G46160EnsemblPlants:AT2G46160.1entrez:819223
Gene3D:3.30.40.10GeneID:819223GO:GO:0008270GO:GO:0016021
GO:GO:0016567Gramene:AT2G46160.1hmmpanther:PTHR14155hmmpanther:PTHR14155:SF71
HOGENOM:HOG000237642InParanoid:O82353InterPro:IPR001841InterPro:IPR013083
KEGG:ath:AT2G46160OMA:PNNNIENPaxDb:O82353Pfam:O82353
Pfam:PF13639Pfscan:PS50089PhylomeDB:O82353PIR:D84899
PRO:PR:O82353PROSITE:PS50089ProteinModelPortal:O82353Proteomes:UP000006548
RefSeq:NP_182139.1SMART:SM00184SMR:O82353SUPFAM:SSF57850
TAIR:AT2G46160TMHMM:TMhelixUniGene:At.37022UniPathway:UPA00143
UniProt:O82353
Coordinates (TAIR10) chr2:+:18963109..18963753
Molecular Weight (calculated) 23098.60 Da
IEP (calculated) 6.33
GRAVY (calculated) 0.01
Length 214 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTLASSASV FLVHPPLPPS PPQAGNHSYL TTLGFGYSIA IALGFLVLLS TVLLSSYICC RDSRRRTTAV ESTGDRGGSV ILPRIIFVAE EDNEDLEAGD
101: VVVGLDQAVI NSYPKFHFSK DTSAASSDGF GGGGDTTCSI CLCEYKEAEM LRMMPECKHY FHLCCLDAWL KLNGSCPVCR NSPLPTPTST PLSTPLSEVV
201: PLSQYAADRR RARR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)