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AT5G19290.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.954
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alpha/beta-Hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
alpha/beta-Hydrolases superfamily protein; BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G14980.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IPEYeggNOG:ENOG410XVK3EMBL:AY063808EMBL:AY086477
EMBL:BT000741EMBL:BT002367EMBL:CP002688EnsemblPlants:AT5G19290
EnsemblPlants:AT5G19290.1entrez:832049ESTHER:arath-AT5G19290Gene3D:3.40.50.1820
GeneID:832049GO:GO:0005886Gramene:AT5G19290.1hmmpanther:PTHR11614
hmmpanther:PTHR11614:SF101HOGENOM:HOG000003228InterPro:IPR022742InterPro:IPR029058
KEGG:ath:AT5G19290MEROPS:S33.A24OMA:LFTQWWSPfam:PF12146
PhylomeDB:Q8VZV6Proteomes:UP000006548Reactome:R-ATH-1482883Reactome:R-ATH-426048
RefSeq:NP_197430.1SMR:Q8VZV6STRING:3702.AT5G19290.1SUPFAM:SSF53474
TAIR:AT5G19290UniGene:At.22221UniProt:Q8VZV6
Coordinates (TAIR10) chr5:+:6494113..6495105
Molecular Weight (calculated) 36664.10 Da
IEP (calculated) 6.79
GRAVY (calculated) -0.03
Length 330 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLHPISDAN EHNPFGSLTA DEFYAKHSVS HSSAFITNPR GLKLFTQWWS PLPPTKPIGI IAVVHGFTGE SSWFLQLTSI LFAKSGFITC AIDHQGHGFS
101: DGLIAHIPDI NPVVDDCISF FDDFRSRQTP SDLPCFLYSE SLGGAIALYI SLRQRGVWDG LILNGAMCGI SDKFKPPWPL EHLLFVVANL IPTWRVIPTR
201: GSIPDVSFKE PWKRKLAMAS PRRTVAKPRA ATAYELIRVC KDLQGRFEEV EVPLLIVHGG GDVVCDVACV EELHRRAISE DKTIKIYPEL WHQMIGESEE
301: KVDLVYGDML SWLKSRAERK ARAAVDGGAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)