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AT4G14746.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: EGF-like (InterPro:IPR006210); Has 259 Blast hits to 234 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 184; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXW2eggNOG:ENOG410YPGFEMBL:CP002687EnsemblPlants:AT4G14746
EnsemblPlants:AT4G14746.1entrez:827129GeneID:827129GO:GO:0031225
Gramene:AT4G14746.1hmmpanther:PTHR33881hmmpanther:PTHR33881:SF4InParanoid:F4JIF2
KEGG:ath:AT4G14746OMA:YDNICKEPaxDb:F4JIF2PhylomeDB:F4JIF2
ProteinModelPortal:F4JIF2Proteomes:UP000006548RefSeq:NP_680687.2TAIR:AT4G14746
UniGene:At.45360UniProt:F4JIF2
Coordinates (TAIR10) chr4:-:8462720..8464326
Molecular Weight (calculated) 23355.20 Da
IEP (calculated) 5.86
GRAVY (calculated) -0.06
Length 212 amino acids
Sequence (TAIR10)
(BLAST)
001: MARLRNTLCL VAALLLINQK TATSDFLSPL FAPVYDNICK EVECGKGKCK APSNTTFMYE CECEDGWKQF DQHLKFLPCI TPNCTFDLTC GEAASPAQPK
101: PPPKDNITSF FDPCQWMDCG GGLCNSSMPF QYSCNCREGY SNLMNITTFP CLKQCALGMD CLNLGIPLSN SSSSSPPALP DSSKNQGLNL RGSSLWWITL
201: CVSLAPWRIL FI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)