AT1G11490.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.803 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : zinc finger (C2H2 type) family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
zinc finger (C2H2 type) family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT4G27240.1); Has 263 Blast hits to 257 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 33; Plants - 228; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:3868884..3870065 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40308.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.62 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||
| Length | 365 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRGVWLYLKK SLSCCKAQKS TVACDPDKIQ IQKKENPSGC SRRSMSNLRD VFVTNGDEGA MQNVSCCSSR SLESSRFVNT VKFEENAGYS DRFKGLLSGA 101: SSSDLLPGRC SERFDVVGSD ICGFGVLACQ KCHERVRDLD AFEAHYLSNH SVVRLLAGDF SRTTVELICN TGYSHKLGKM KGNNISAIFK IQNLQRVVAD 201: FEDYRELVKI RANKLSKKHS RCMADGNEFL GFHGTTLSCT LGFSNSSSNL CFSDHCEVCH ILRHGFSPKT RPDGIKGVLT ASTSSTALES IETDQGRNRG 301: SLIAVVLCRV IAGRVHKPMQ TFENSLGFSE FDSLALKVGQ NSRIEELYLL STKALLPCFV IIFKP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)