AT5G41380.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : CCT motif family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CCT motif family protein; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT1G63820.1); Has 1690 Blast hits to 1687 proteins in 111 species: Archae - 0; Bacteria - 2; Metazoa - 13; Fungi - 3; Plants - 1603; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:16562129..16563553 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 35081.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.08 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.75 | ||||||||||||||||||||||||||||
| Length | 307 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDSSTDFYIF DGSSSSSSSV FRNSSPDMFS SDTTTTTDLF CNNELYSVEE SLNIFDHFTP QHILSSSPPS DLLGTLSLSQ HIPTGLYPNF SDFQISDAVK 101: TEKFFDGHNQ AATMARSYST IENSGRYMQR SFSSNSVEGK QTQVPFNIPM MDSSNLSYNN LSSPENAFFS SQMRRVYSTG DLQNNMEMQR SSENSTMPFS 201: EEQNFKVGRY SAEERKEKIS KYRAKRNQRN FTKTIKYACR KTLADSRPRI RGRFARNDEV VEIPNIEDDD SELWKLDGLH EKEEASVSSF VVQQPLLHYT 301: TSSSFFW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)