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AT5G23405.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : HMG-box (high mobility group) DNA-binding family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HMG-box (high mobility group) DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: high-mobility group box 6 (TAIR:AT5G23420.1); Has 632 Blast hits to 609 proteins in 129 species: Archae - 0; Bacteria - 10; Metazoa - 212; Fungi - 44; Plants - 246; Viruses - 7; Other Eukaryotes - 113 (source: NCBI BLink).
Protein Annotations
EMBL:AB018110EMBL:AY052244EMBL:BT020349EMBL:CP002688
EnsemblPlants:AT5G23405EnsemblPlants:AT5G23405.1entrez:832406Gene3D:1.10.30.10
GeneID:832406Genevisible:Q941D1GO:GO:0003677GO:GO:0005634
HOGENOM:HOG000242532InParanoid:Q941D1IntAct:Q941D1InterPro:IPR009071
KEGG:ath:AT5G23405ncoils:CoilOMA:RMHICYAPaxDb:Q941D1
Pfam:PF00505Pfam:Q941D1Pfscan:PS50118PhylomeDB:Q941D1
PRIDE:Q941D1PRO:PR:Q941D1PROSITE:PS50118ProteinModelPortal:Q941D1
Proteomes:UP000006548RefSeq:NP_568430.2RefSeq:NP_851063.1SMART:SM00398
SMR:Q941D1STRING:3702.AT5G23405.1SUPFAM:SSF47095TAIR:AT5G23405
UniGene:At.26423UniProt:Q941D1
Coordinates (TAIR10) chr5:-:7883097..7884243
Molecular Weight (calculated) 17015.40 Da
IEP (calculated) 4.36
GRAVY (calculated) -1.06
Length 149 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGASSEDSS IFARCEDVDC NKKIPVELVR MHICYAMFHR TLAARGFGTQ TQAKKKPTNK KKSTTSLTDF AVFMNHFRKS FRTDYNGALV KEGSKIGWEM
101: WKSMTEDEKK DYLDKAADEE DEDEDTVEEQ ADDSDDAEDN EVKETDDDN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)