AT3G06040.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L12, chloroplast (InterPro:IPR015608), Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (InterPro:IPR014719), Ribosomal protein L7/L12, C-terminal (InterPro:IPR013823); BEST Arabidopsis thaliana protein match is: Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (TAIR:AT1G70190.2); Has 8332 Blast hits to 8332 proteins in 2728 species: Archae - 0; Bacteria - 5601; Metazoa - 194; Fungi - 132; Plants - 253; Viruses - 0; Other Eukaryotes - 2152 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:-:1824516..1825076 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 20800.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 10.26 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.51 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 186 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MKLISLVRNV RSRQCQPEVI WSVQVRFLQQ DSVSKAKPKK YKYPSVYDPY GPRPQPSSKI MELAERIAAL SPEERKQIGP ALNEHLRLPK QQMISSDGIG 101: AKQDTGAGNV EEKKEKTAFD VKLEKFNASD KIKVIKEVRT FTSLGLKEAK ELVEKVPAIL KQGVTKEEAN EIIAKIKAVG GIAVME |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)