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AT3G06040.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L12, chloroplast (InterPro:IPR015608), Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (InterPro:IPR014719), Ribosomal protein L7/L12, C-terminal (InterPro:IPR013823); BEST Arabidopsis thaliana protein match is: Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (TAIR:AT1G70190.2); Has 8332 Blast hits to 8332 proteins in 2728 species: Archae - 0; Bacteria - 5601; Metazoa - 194; Fungi - 132; Plants - 253; Viruses - 0; Other Eukaryotes - 2152 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0222eggNOG:KOG1715EMBL:AC068073EMBL:AY063991
EMBL:AY096690EMBL:CP002686EnsemblPlants:AT3G06040EnsemblPlants:AT3G06040.1
EnsemblPlants:AT3G06040.2EnsemblPlants:AT3G06040.3entrez:819777Gene3D:3.30.1390.10
GeneID:819777GO:GO:0003735GO:GO:0005840GO:GO:0006412
GO:GO:0008233Gramene:AT3G06040.1Gramene:AT3G06040.2Gramene:AT3G06040.3
hmmpanther:PTHR24089hmmpanther:PTHR24089:SF314HOGENOM:HOG000248814InterPro:IPR013823
InterPro:IPR014719KEGG:ath:AT3G06040KO:K02935OMA:KPKKYKY
Pfam:PF00542PhylomeDB:Q9M7T1ProDom:PD001326Proteomes:UP000006548
RefSeq:NP_001078113.1RefSeq:NP_187255.1RefSeq:NP_974234.1SMR:Q9M7T1
STRING:3702.AT3G06040.1SUPFAM:SSF54736TAIR:AT3G06040UniGene:At.27114
UniProt:Q9M7T1
Coordinates (TAIR10) chr3:-:1824516..1825076
Molecular Weight (calculated) 20800.40 Da
IEP (calculated) 10.26
GRAVY (calculated) -0.51
Length 186 amino acids
Sequence (TAIR10)
(BLAST)
001: MKLISLVRNV RSRQCQPEVI WSVQVRFLQQ DSVSKAKPKK YKYPSVYDPY GPRPQPSSKI MELAERIAAL SPEERKQIGP ALNEHLRLPK QQMISSDGIG
101: AKQDTGAGNV EEKKEKTAFD VKLEKFNASD KIKVIKEVRT FTSLGLKEAK ELVEKVPAIL KQGVTKEEAN EIIAKIKAVG GIAVME
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)