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AT3G44680.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : histone deacetylase 9
Curator
Summary (TAIR10)
Class I RPD3 type protein
Computational
Description (TAIR10)
histone deacetylase 9 (HDA9); FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: histone deacetylation; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase (InterPro:IPR003084), Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 1 (TAIR:AT4G38130.1); Has 8723 Blast hits to 8511 proteins in 1453 species: Archae - 219; Bacteria - 3191; Metazoa - 1512; Fungi - 548; Plants - 472; Viruses - 0; Other Eukaryotes - 2781 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G44680-MONOMERBioGrid:8914EC:3.5.1.98eggNOG:COG0123
eggNOG:KOG1342EMBL:AL138652EMBL:BT002003EMBL:BT006576
EMBL:CP002686EnsemblPlants:AT3G44680EnsemblPlants:AT3G44680.1entrez:823594
Gene3D:3.40.800.20GeneID:823594Genevisible:Q8H0W2GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0010187GO:GO:0032041
Gramene:AT3G44680.1hmmpanther:PTHR10625hmmpanther:PTHR10625:SF124HOGENOM:HOG000225180
InParanoid:Q8H0W2InterPro:IPR000286InterPro:IPR003084InterPro:IPR023801
iPTMnet:Q8H0W2KEGG:ath:AT3G44680KO:K06067OMA:DERMDQH
PANTHER:PTHR10625PaxDb:Q8H0W2Pfam:PF00850Pfam:Q8H0W2
PhylomeDB:Q8H0W2PIR:T47443PIRSF:PIRSF037913PRIDE:Q8H0W2
PRINTS:PR01270PRINTS:PR01271PRO:PR:Q8H0W2ProteinModelPortal:Q8H0W2
Proteomes:UP000006548RefSeq:NP_190054.2SMR:Q8H0W2STRING:3702.AT3G44680.1
SUPFAM:SSF52768TAIR:AT3G44680tair10-symbols:HDA09tair10-symbols:HDA9
UniGene:At.36124UniProt:Q8H0W2
Coordinates (TAIR10) chr3:-:16226769..16229752
Molecular Weight (calculated) 48690.60 Da
IEP (calculated) 5.11
GRAVY (calculated) -0.41
Length 426 amino acids
Sequence (TAIR10)
(BLAST)
001: MRSKDKISYF YDGDVGSVYF GPNHPMKPHR LCMTHHLILA YGLHSKMEVY RPHKAYPIEM AQFHSPDYVE FLQRINPENQ NLFPNEMARY NLGEDCPVFE
101: DLFEFCQLYA GGTIDAARRL NNKLCDIAIN WAGGLHHAKK CDASGFCYIN DLVLGILELL KHHPRVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKFGDK
201: FFPGTGDVKE IGEREGKFYA INVPLKDGID DSSFNRLFRT IISKVVEIYQ PGAIVLQCGA DSLARDRLGC FNLSIDGHAE CVKFVKKFNL PLLVTGGGGY
301: TKENVARCWT VETGILLDTE LPNEIPENDY IKYFAPDFSL KIPGGHIENL NTKSYISSIK VQILENLRYI QHAPSVQMQE VPPDFYIPDF DEDEQNPDVR
401: ADQRSRDKQI QRDDEYFDGD NDNDAS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)