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AT4G19010.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23667806 (2013): plastid plastid thylakoid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AMP-dependent synthetase and ligase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: OPC-8:0 CoA ligase1 (TAIR:AT1G20510.1); Has 83687 Blast hits to 76218 proteins in 3879 species: Archae - 1158; Bacteria - 54713; Metazoa - 3437; Fungi - 4716; Plants - 2771; Viruses - 1; Other Eukaryotes - 16891 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G19010-MONOMEREC:6.2.1.-eggNOG:COG0318eggNOG:KOG1176
EMBL:AK117362EMBL:AL021711EMBL:AL161549EMBL:AY250834
EMBL:AY376733EMBL:BT005912EMBL:CP002687EnsemblPlants:AT4G19010
EnsemblPlants:AT4G19010.1entrez:827639GeneID:827639Genevisible:Q84P24
GO:GO:0005524GO:GO:0005777GO:GO:0006744GO:GO:0016405
Gramene:AT4G19010.1gramene_plant_reactome:1119531gramene_plant_reactome:6876097hmmpanther:PTHR24096
hmmpanther:PTHR24096:SF253HOGENOM:HOG000230009InParanoid:Q84P24InterPro:IPR000873
InterPro:IPR020845InterPro:IPR025110iPTMnet:Q84P24KEGG:ath:AT4G19010
KO:K01904OMA:SIVEDSWPaxDb:Q84P24Pfam:PF00501
Pfam:PF13193Pfam:Q84P24PhylomeDB:Q84P24PIR:F85214
PIR:T05038PRIDE:Q84P24PRO:PR:Q84P24PROSITE:PS00455
ProteinModelPortal:Q84P24Proteomes:UP000006548Reactome:R-ATH-75105RefSeq:NP_193636.1
SABIO-RK:Q84P24scanprosite:PS00455SMR:Q84P24STRING:3702.AT4G19010.1
SUPFAM:SSF56801TAIR:AT4G19010UniGene:At.43659UniProt:Q84P24
Coordinates (TAIR10) chr4:-:10411715..10414221
Molecular Weight (calculated) 61960.20 Da
IEP (calculated) 8.29
GRAVY (calculated) 0.11
Length 566 amino acids
Sequence (TAIR10)
(BLAST)
001: MAATHLHIPP NPKTQTSHQN PPFWFSSKTG IYTSKFPSLH LPVDPNLDAV SALFSHKHHG DTALIDSLTG FSISHTELQI MVQSMAAGIY HVLGVRQGDV
101: VSLVLPNSVY FPMIFLSLIS LGAIVTTMNP SSSLGEIKKQ VSECSVGLAF TSTENVEKLS SLGVSVISVS ESYDFDSIRI ENPKFYSIMK ESFGFVPKPL
201: IKQDDVAAIM YSSGTTGASK GVLLTHRNLI ASMELFVRFE ASQYEYPGSS NVYLAALPLC HIYGLSLFVM GLLSLGSTIV VMKRFDASDV VNVIERFKIT
301: HFPVVPPMLM ALTKKAKGVC GEVFKSLKQV SSGAAPLSRK FIEDFLQTLP HVDLIQGYGM TESTAVGTRG FNSEKLSRYS SVGLLAPNMQ AKVVDWSSGS
401: FLPPGNRGEL WIQGPGVMKG YLNNPKATQM SIVEDSWLRT GDIAYFDEDG YLFIVDRIKE IIKYKGFQIA PADLEAVLVS HPLIIDAAVT AAPNEECGEI
501: PVAFVVRRQE TTLSEEDVIS YVASQVAPYR KVRKVVMVNS IPKSPTGKIL RKELKRILTN SVSSRL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)