AT1G04930.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : hydroxyproline-rich glycoprotein family protein | ||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
hydroxyproline-rich glycoprotein family protein; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT2G32840.1); Has 1624 Blast hits to 1330 proteins in 201 species: Archae - 0; Bacteria - 140; Metazoa - 517; Fungi - 162; Plants - 364; Viruses - 182; Other Eukaryotes - 259 (source: NCBI BLink). | ||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:1396546..1398988 | ||||||||||||||||||||||||
Molecular Weight (calculated) | 36795.90 Da | ||||||||||||||||||||||||
IEP (calculated) | 10.74 | ||||||||||||||||||||||||
GRAVY (calculated) | -0.74 | ||||||||||||||||||||||||
Length | 332 amino acids | ||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSIPDPNSSA SLTVSPSLST ASETPVTPVN TVRPPPSQPP PAPPPLPPPT YRPIAPLRHP NPFQQQSAYS NNLYAHSIPV RRQIQDPSAV LYPFALPGRG 101: FSARPVRGFV ADPSVTAGNL SGYPPRPSFT YDPGPYEQRQ MESLLQQFIR ERNPQIRPLP RLGLGSPVGL GPIRASPQFL QPRVAPPPTS ILDTSRNRKA 201: RSKDGALAVV RGRKVRITEG SSSLYSLGRS WLKNGAHVGI QPQRSGIMKP LPKPLPVDLT TETSVPDDPD EESADEDKED EEAVKQLSEK DLLKRHIERA 301: KKVRAQLREE RSRRIRRYKE RITLILAQSE DR |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)