suba logo
AT1G04930.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : hydroxyproline-rich glycoprotein family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
hydroxyproline-rich glycoprotein family protein; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT2G32840.1); Has 1624 Blast hits to 1330 proteins in 201 species: Archae - 0; Bacteria - 140; Metazoa - 517; Fungi - 162; Plants - 364; Viruses - 182; Other Eukaryotes - 259 (source: NCBI BLink).
Protein Annotations
EMBL:AC004809EMBL:AY085490EMBL:CP002684EnsemblPlants:AT1G04930
EnsemblPlants:AT1G04930.1entrez:839377ExpressionAtlas:Q9MAU1GeneID:839377
GO:GO:0007049GO:GO:0017053Gramene:AT1G04930.1hmmpanther:PTHR37173
hmmpanther:PTHR37173:SF1HOGENOM:HOG000093098InterPro:IPR028226ncoils:Coil
Pfam:PF15306PhylomeDB:Q9MAU1PIR:G86182Proteomes:UP000006548
RefSeq:NP_563722.1TAIR:AT1G04930UniGene:At.42424UniProt:Q9MAU1
Coordinates (TAIR10) chr1:-:1396546..1398988
Molecular Weight (calculated) 36795.90 Da
IEP (calculated) 10.74
GRAVY (calculated) -0.74
Length 332 amino acids
Sequence (TAIR10)
(BLAST)
001: MSIPDPNSSA SLTVSPSLST ASETPVTPVN TVRPPPSQPP PAPPPLPPPT YRPIAPLRHP NPFQQQSAYS NNLYAHSIPV RRQIQDPSAV LYPFALPGRG
101: FSARPVRGFV ADPSVTAGNL SGYPPRPSFT YDPGPYEQRQ MESLLQQFIR ERNPQIRPLP RLGLGSPVGL GPIRASPQFL QPRVAPPPTS ILDTSRNRKA
201: RSKDGALAVV RGRKVRITEG SSSLYSLGRS WLKNGAHVGI QPQRSGIMKP LPKPLPVDLT TETSVPDDPD EESADEDKED EEAVKQLSEK DLLKRHIERA
301: KKVRAQLREE RSRRIRRYKE RITLILAQSE DR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)