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AT4G15410.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (PUX5); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: UBX (InterPro:IPR001012), SEP domain (InterPro:IPR012989), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: plant UBX domain containing protein 4 (TAIR:AT4G04210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:12507eggNOG:ENOG410YGXUeggNOG:KOG2086EMBL:AL161541
EMBL:AY050766EMBL:BT008747EMBL:CP002687EMBL:Z97338
EnsemblPlants:AT4G15410EnsemblPlants:AT4G15410.1entrez:827210GeneID:827210
Genevisible:Q7Y175GO:GO:0051117Gramene:AT4G15410.1HOGENOM:HOG000159961
InterPro:IPR001012InterPro:IPR009060InterPro:IPR012989InterPro:IPR029071
iPTMnet:Q7Y175KEGG:ath:AT4G15410KO:K14012MINT:MINT-8070024
OMA:RLVCRMNPaxDb:Q7Y175Pfam:PF00789Pfam:PF08059
Pfam:PF14555Pfam:Q7Y175Pfscan:PS50033Pfscan:PS51399
PhylomeDB:Q7Y175PIR:F71418PRIDE:Q7Y175PRO:PR:Q7Y175
PROSITE:PS50033PROSITE:PS51399ProteinModelPortal:Q7Y175Proteomes:UP000006548
RefSeq:NP_567463.1SMART:SM00166SMART:SM00553SMR:Q7Y175
STRING:3702.AT4G15410.1SUPFAM:SSF102848SUPFAM:SSF46934SUPFAM:SSF54236
TAIR:AT4G15410tair10-symbols:PUX5UniGene:At.26568UniProt:Q7Y175
Coordinates (TAIR10) chr4:+:8814868..8816596
Molecular Weight (calculated) 44998.70 Da
IEP (calculated) 5.31
GRAVY (calculated) -0.70
Length 421 amino acids
Sequence (TAIR10)
(BLAST)
001: MATETNENLI NSFIEITSSS REEANFFLES HTWNLDAAVS TFLDNDAAAA AEPNPTGPPP PSSTIAGAQS PSQSHSPDYT PSETSPSPSR SRSASPSSRA
101: APYGLRSRGG AGENKETENP SGIRSSRSRQ HAGNIRTFAD LNRSPADGEG SDSDEANEYY TGGQKSGMMV QDPKKVKDVD ELFDQARQSA VDRPVEPSRS
201: ASTSFTGAAR LLSGEAVSSS PQQQQQEQPQ RIMHTITFWL NGFTVNDGPL RGFSDPENAA FMNSISRSEC PSELEPADKK IPVHVDLVRR GENFTEPPKP
301: KNPFQGVGRT LGASGSGSSS APQASSAPMN VAPAPSRGLV VDPAAPTTSI QLRLADGTRL VSRFNNHHTV RDVRGFIDAS RPGGSKEYQL LTMGFPPKQL
401: TELDQTIEQA GIANAVVIQK F
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)