AT5G05520.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Outer membrane OMP85 family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Outer membrane OMP85 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial surface antigen (D15) (InterPro:IPR000184), Surface antigen variable number (InterPro:IPR010827); BEST Arabidopsis thaliana protein match is: Outer membrane OMP85 family protein (TAIR:AT3G11070.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:1632912..1635104 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 58523.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.45 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.45 | ||||||||||||||||||||||||||||||||
| Length | 524 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MENPAEKPDP NPSKPKIESE DEREELGDIN GDEEEEEEYE EEDDGKPRTR EDAIADRIKA ESLFRRMRAT PVAVRVHDVI VKGNEKTKDH VIEAEVDVVR 101: QATTLQELLK ASKVANFNLQ ALDIFDSVKI TLDSGPPELP GTTNVVIDVV ESKSPITGQI GTFTKAEARS SSLEGSLKYK NIFGYGDIWD GSLAYGCDHS 201: AEVGLGMYLP RFRGRPTPFT SRVYLSTQDW LKFSSYKERA LGLSLGLIAS KYHELAYNIA WRNLIDPSQM ASRSIRRQLG HNLVSALKYT FKFDQRNSSL 301: RPTRGYSFIS TSQIGGLAPD SRTLRFLRQE IDLRYAVPLG FYRAALNFGI AGGITFPWGS GYKSRASCVP ERFFLGGNIS PVCSLGGPSA LWGFKTRGLG 401: PNEPRREVQD DESGDTYERD FVGGDVAVTA FADLSFDFPL KWFRDRGIHG HVFACAGNMA ELSENKYRNF TAPKLLETFR SSVGAGIVVP TSLFRMELNY 501: CHILKKQEHD RAKSGFFMTF STSS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)