AT5G04540.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : Myotubularin-like phosphatases II superfamily | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
Myotubularin-like phosphatases II superfamily; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity; INVOLVED IN: dephosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Myotubularin phosphatase (InterPro:IPR017906), GRAM (InterPro:IPR004182), Myotubularin-related (InterPro:IPR010569); BEST Arabidopsis thaliana protein match is: Myotubularin-like phosphatases II superfamily (TAIR:AT3G10550.1); Has 1724 Blast hits to 1576 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 1283; Fungi - 139; Plants - 41; Viruses - 0; Other Eukaryotes - 261 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr5:-:1296826..1302299 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 92592.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.83 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 833 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MTALRPLSGR SRSLRCSSEK MEGTGSWDVL EWTKLDSASW SGSYSNLDCL LESERIIFEA CGVILINTDE AGTLLLSNFR ILFLSEGTRK LVPLGTIPFV 101: AIEKFNKLAP KVQSNKYHNN ENAPTRLLQV TGKDMRIVVY GFRPGTKQRH TVVDTLLRCN KPERVWDLYA FTCGPSQFGN TNPKERLLNE YFRLLGKSSQ 201: RASMNMIEDG SFTLSNDLWR ITNLNSNYDL CQSYPFALMV PKSISDEELL QTSTFRARCR LPVISWCHPG SGAVIARSSQ PLVGLMMNMR SNSDEKLVAS 301: FCTQLAGHKG ARRKLYIVDA RPRKNALANG AKGGGSESSS NYLQSEIVFL GIDNIHAMRE SFSRLRDYLD MHGTTSSDGT SSFLRHGGWT WGGGNLSSMS 401: ASVSVLGDSG WLSHIQSILA GVAWIAARVA MESASVLVHC SDGWDRTTQL VSLACLLLDP YYRTFSGFQA LVEKDWLSFG HPFSDRVGMP NVSESGNFEL 501: PIQSSSARSF PSSPVRQSPG SAAAQSSSSS YGLNNYSPIF LQWLDCISQL MRMYPSAFEF SPTFLVDFID CLLSCRFGNF LCNSEKERQQ CGISETCGCI 601: WAYLADLRSS SGTSHVHCNP FYDPSRYDGP LLPPAAALAP TLWPQFHLRW ACPVEPNVTE TEDQCRAMTV KYSEMKKEKE EAERKVDELS SAMESLNEEL 701: LNERDISRAA RESAKRATKE RAVISRAVQS LGCKVKFTRN GDCTVEVEDG PQKCSHSIPQ KQSEDNTTDV SESISSVTEQ NVCEAVCPLR TREGTCRWPD 801: AGCARIGNQF LGLKTNFEAF DNLCVYDSYF TAE |
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)