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AT5G22350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:18559960 (2008): mitochondrion
  • PMID:31871212 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:27943495 (2017): mitochondrion
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21311031 (2011): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1022)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ELONGATED MITOCHONDRIA 1 (ELM1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1022 (InterPro:IPR009367); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1022) (TAIR:AT5G06180.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG3660eggNOG:ENOG410IJIXEMBL:AB007651EMBL:AB379589
EMBL:AY059915EMBL:AY128808EMBL:CP002688EnsemblPlants:AT5G22350
EnsemblPlants:AT5G22350.1entrez:832295GeneID:832295GO:GO:0000266
GO:GO:0005741Gramene:AT5G22350.1hmmpanther:PTHR33986hmmpanther:PTHR33986:SF3
HOGENOM:HOG000240785InParanoid:Q93YN4InterPro:IPR009367KEGG:ath:AT5G22350
OMA:LYIFCPPPaxDb:Q93YN4Pfam:PF06258Pfam:Q93YN4
PhylomeDB:Q93YN4PRIDE:Q93YN4PRO:PR:Q93YN4ProteinModelPortal:Q93YN4
Proteomes:UP000006548RefSeq:NP_568417.1STRING:3702.AT5G22350.1SUPFAM:SSF53756
TAIR:AT5G22350tair10-symbols:ELM1UniGene:At.25246UniProt:Q93YN4
Coordinates (TAIR10) chr5:-:7397762..7400746
Molecular Weight (calculated) 47607.20 Da
IEP (calculated) 9.37
GRAVY (calculated) -0.18
Length 427 amino acids
Sequence (TAIR10)
(BLAST)
001: MRPILLPDPP SLSTGVPDIF EQGGSHNVVR RAVVIGNGFP GSENQCIGLV RALGLSDNHL LYRVTRPKGG LNEWLHWLPV GFHKKLDFIL RHIYLYSRLM
101: LGSKQSKYIS SVPSENGGNV GLASILEADV KGIVNLARQT YEKDGPLIVI ACGRDTISIA SSIRRLASEN VFVVQIQHPR SHLNRFDMVI TPRHDYYPLT
201: LEAQEQVPRF MRSWITPREP PQDHVVLTTG ALHQIDYASL RKAASAWHDE FAALPKPLVV VNIGWPRSNC RYGADLAKQL TDSLLNVLAT CGSVRITLSY
301: KTPAKVSRVI FKELGDNPKV YIWNGQEPNP YMGHLAWGDA FVVTADSVSL ISEACSTGKP VYVVGADHCK WKIAEFQKSL RERGVVRSFT GFEDMSESWS
401: YPPLNDTAEA ATRIRRELAA RGWSLRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)