AT5G20200.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.786 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : nucleoporin-related | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
nucleoporin-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G10650.1); Has 1474 Blast hits to 595 proteins in 170 species: Archae - 0; Bacteria - 165; Metazoa - 255; Fungi - 183; Plants - 74; Viruses - 0; Other Eukaryotes - 797 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:6816776..6821620 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 81688.80 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.80 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.69 | ||||||||||||||||||||||||
| Length | 762 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATQGEATFS AAATTTSSYP TGGVGGKLKR QSARRHAATP YSRPTQNQVQ RRPWISRIVD PAYRIISGGA TRILPYFFSN AASAPALAAP PEDQNQHQGE 101: LQNNPQDNDP SVTPISNKPE PASIEVGGPS GTANVNEGNF SISAQRRGKA ALNDDVAISE LERLMEGKTF SQAEIDRLIE MISSRAIDLP DVKRDERNLE 201: IPLREGAKKN MSLFDKAKEP IGGKDANSEI WATPTPLAKS IILDGDKIRD EVGLSPAELA KAYMGGQTSS SSSQGFVARN EKDCLDRSML VGKSSLASPS 301: SKPSACWPGI KSSEQSGFAT PQSRRESYGL QNFPRTPYSR TILSNSKSKL MQLQNDSSKH LSNLQSPSQS VERRYGQLSK GRDGGLFGPS RRTRQSATPS 401: MVSPYSRPSR GASRFENSAI MKSSEAGESS YLSRSQITTY GKHKEAEVGT LTVPTHSSQI ARTILDHLER TQSQSTPKNK TAELKLATSW RHPQSSKTVE 501: KSSSDVTNVK KDGSAKLHED IQNIFSQNQP SSVLKPPATT TGDIQNGMNK TASATNGIFR GTQAASSGGN ALQYEFGKPK GSLSRSMHDE LGTSSQDAAK 601: AVPYSFGGET ANLPKPPSHS LGNNKPVLPS ISVAKPFQKW AVPSGSNAGF TFPVSSSDGT TSSEPTTPSI MPFTTSPPVA SGGGVAITNH HEARKDYEIP 701: QFSFDGSNRR GDKSPLVFSF PSVSEEVVSE DDDARFGIKY TFGSEKPERI SFSSAGSDGV CC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)