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AT1G66660.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.944
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein with RING/U-box and TRAF-like domains
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein with RING/U-box and TRAF-like domains; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Seven-in-absentia protein, TRAF-like domain (InterPro:IPR018121), Zinc finger, SIAH-type (InterPro:IPR013010), Seven In Absentia Homolog-type (InterPro:IPR013323), Seven-in-absentia protein, sina (InterPro:IPR004162); BEST Arabidopsis thaliana protein match is: Protein with RING/U-box and TRAF-like domains (TAIR:AT1G66650.1); Has 1318 Blast hits to 1315 proteins in 668 species: Archae - 0; Bacteria - 0; Metazoa - 882; Fungi - 0; Plants - 429; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT1G66660EnsemblPlants:AT1G66660.1entrez:842984hmmpanther:PTHR10315
hmmpanther:PTHR10315:SF43KEGG:00220+6.3.2.-KEGG:00261+6.3.2.-KEGG:00380+6.3.2.-
Pfam:PF03145Pfscan:PS51081unipathway:UPA00143
Coordinates (TAIR10) chr1:-:24862056..24863028
Molecular Weight (calculated) 25540.20 Da
IEP (calculated) 8.79
GRAVY (calculated) -0.18
Length 224 amino acids
Sequence (TAIR10)
(BLAST)
001: MFSIVLLVVN HSRDQSIRCN IGDIRCRAME KVIEASIVPC PNAKHGCKET TTYCNQSSHE KVCKFVRCSC PVSNCNYVSS YSNLKSHACS TAHVWGEDDI
101: HFQLVIDRPR IFNMNLGRKK TVVFKEEKEG DLIVVQAFKG LEGVYVTVNR IAHMAPGIRD LSCSLAKLNE YSTLRSGSLV KKIQKVREKM HLEDDLMWIP
201: PKMLSGDHWK MQICIAYGYK FIHI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)