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AT5G05770.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : WUSCHEL related homeobox 7
Curator
Summary (TAIR10)
Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box.
Computational
Description (TAIR10)
WUSCHEL related homeobox 7 (WOX7); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: WUSCHEL related homeobox 5 (TAIR:AT3G11260.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EMBL:AB005237EMBL:AB493739EMBL:CP002688EnsemblPlants:AT5G05770
EnsemblPlants:AT5G05770.1entrez:830462Gene3D:1.10.10.60GeneID:830462
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0007275Gramene:AT5G05770.1hmmpanther:PTHR24326hmmpanther:PTHR24326:SF295
InParanoid:Q9FFK0InterPro:IPR001356InterPro:IPR009057KEGG:ath:AT5G05770
OMA:FDHRQDTPaxDb:Q9FFK0Pfam:PF00046Pfam:Q9FFK0
Pfscan:PS50071PhylomeDB:Q9FFK0PRO:PR:Q9FFK0PROSITE:PS50071
ProteinModelPortal:Q9FFK0Proteomes:UP000006548RefSeq:NP_196196.1SMART:SM00389
STRING:3702.AT5G05770.1SUPFAM:SSF46689TAIR:AT5G05770tair10-symbols:WOX7
UniGene:At.54734UniProt:Q9FFK0
Coordinates (TAIR10) chr5:+:1734487..1734855
Molecular Weight (calculated) 13997.80 Da
IEP (calculated) 11.11
GRAVY (calculated) -0.99
Length 122 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSRGFNIKA RGLCNNNNGG GGTGAKCGRW NPTVEQVKLL TDLFKAGLRT PSTDQIQKIS MELSFYGKIE SKNVFYWFQN HKARERQKCR KISTVKFDHR
101: QDTDLSKPRR DNVRRHQLPA KG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)