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AT3G12910.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 42 (TAIR:AT2G43000.1); Has 2920 Blast hits to 2915 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2920; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J9NXeggNOG:ENOG41113AZEMBL:AB026645EMBL:AP000385
EMBL:CP002686EnsemblPlants:AT3G12910EnsemblPlants:AT3G12910.1entrez:820475
GeneID:820475GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0006355Gramene:AT3G12910.1hmmpanther:PTHR31719
hmmpanther:PTHR31719:SF42HOGENOM:HOG000237406InterPro:IPR003441KEGG:ath:AT3G12910
OMA:ILMDTTHPfam:PF02365Pfscan:PS51005PhylomeDB:Q9LSI4
PROSITE:PS51005Proteomes:UP000006548RefSeq:NP_187897.2SMR:Q9LSI4
STRING:3702.AT3G12910.1SUPFAM:SSF101941TAIR:AT3G12910UniGene:At.39525
UniProt:Q9LSI4
Coordinates (TAIR10) chr3:+:4109417..4110648
Molecular Weight (calculated) 35200.20 Da
IEP (calculated) 8.85
GRAVY (calculated) -0.89
Length 303 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKMIEPRDN TRESEDEDAL KLPGFRFHPT DEELVGYYLS KKVLLKKTSK IDEIVSQIDI YKFDPWDLPR SRNTEKESYF FCKRGRKYRN SIRPNRVTGS
101: GFWKATGIDK PVYSDGSNKA VIGLKKTLVY YLGSAGKGNK TDWMMHEFRL PTANDTIPGG PTHSNPTPTS LLHAEVWTLC RIFKRTVSSR KYTPDWRELA
201: NGKRVKQQQS NYQEAYINFG DNESSSSTNV MNVREGKGNY ERSVFQLQQT PYQHQNQPIL MDTTHVDSFQ HFSNDNIHHE TYETWPDELR SVVEFAFPPS
301: FLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)