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AT1G22810.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.
Computational
Description (TAIR10)
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G71520.1); Has 4908 Blast hits to 4906 proteins in 216 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4903; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J13YeggNOG:ENOG410YYQ2EMBL:AC003979EMBL:AF325106
EMBL:AY086697EMBL:BT024683EMBL:CP002684EnsemblPlants:AT1G22810
EnsemblPlants:AT1G22810.1entrez:838887Gene3D:3.30.730.10GeneID:838887
Genevisible:O80542GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0005737GO:GO:0006351GO:GO:0009873Gramene:AT1G22810.1
hmmpanther:PTHR31985hmmpanther:PTHR31985:SF3HOGENOM:HOG000237624InParanoid:O80542
InterPro:IPR001471InterPro:IPR016177KEGG:ath:AT1G22810OMA:GETQSKY
PaxDb:O80542Pfam:O80542Pfam:PF00847Pfscan:PS51032
PhylomeDB:O80542PIR:T00763PRINTS:PR00367PRO:PR:O80542
PROSITE:PS51032ProteinModelPortal:O80542Proteomes:UP000006548RefSeq:NP_173695.1
SMART:SM00380SMR:O80542STRING:3702.AT1G22810.1SUPFAM:SSF54171
TAIR:AT1G22810UniGene:At.48219UniGene:At.65041UniProt:O80542
Coordinates (TAIR10) chr1:-:8074535..8074969
Molecular Weight (calculated) 15817.30 Da
IEP (calculated) 6.51
GRAVY (calculated) -0.47
Length 144 amino acids
Sequence (TAIR10)
(BLAST)
001: MDYRESTGES QSKYKGIRRR KWGKWVSEIR VPGTRDRLWL GSFSTAEGAA VAHDVAFFCL HQPDSLESLN FPHLLNPSLV SRTSPRSIQQ AASNAGMAID
101: AGIVHSTSVN SGCGDTTTYY ENGADQVEPL NISVYDYLGG HDHV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)