AT1G26610.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : C2H2-like zinc finger protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
C2H2-like zinc finger protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT1G26590.1); Has 2336 Blast hits to 2002 proteins in 123 species: Archae - 0; Bacteria - 1; Metazoa - 1559; Fungi - 9; Plants - 678; Viruses - 6; Other Eukaryotes - 83 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:9193735..9195102 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51134.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.64 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.98 | ||||||||||||||||||||||||||||||||||||||||
| Length | 455 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEQFKERKFV CKFCSKRFPC GKSLGGHIRT HMNENSADSD EDEADKLKMI DENGGQSSYG LRENPKKNKR FVDHRQIMAL KQQQQQQQLQ ELRRCRECGK 101: GFVSSKALCG HMACHSEREK IVMDSQSDTE ASSSPIRRRS KRVVVKPHHK AAFVVGGNGI MNQSISASSD ASEIEPEQEE MARSLMMLSR DSSFKKGHNS 201: LAESSDNNSV ILETKSSSGE QVKMFNVKNV EELCKKNKLV VDNQMRSGEE NGDVHYDSDN SDSGYFRNGP KKLDSDVSVD GFFRNKTIMG SGSGFNSSPT 301: KQDRDMNRFR KEWYKEGGSG SGSGSGRSST KYDLRKSKRG FPSHGRKKIK YEFTESVYDS GEHSLETDSC ADTNRTIKIH SKSPMVKKAN GAKKKSKGHE 401: CPICFRVFKS GQALGGHKRS HFIGNQEHRT LVIQHQVAHE MHTLIDLNLP APIDE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)