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AT4G27950.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cytokinin response factor 4
Curator
Summary (TAIR10)
encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.
Computational
Description (TAIR10)
cytokinin response factor 4 (CRF4); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: cytokinin response factor 3 (TAIR:AT5G53290.1); Has 6110 Blast hits to 5757 proteins in 250 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 2; Plants - 6087; Viruses - 2; Other Eukaryotes - 17 (source: NCBI BLink).
Protein Annotations
BioGrid:14195eggNOG:ENOG410JBVYeggNOG:ENOG410YM3EEMBL:AL035524
EMBL:AL161572EMBL:AY560872EMBL:BT033088EMBL:CP002687
EnsemblPlants:AT4G27950EnsemblPlants:AT4G27950.1entrez:828908Gene3D:3.30.730.10
GeneID:828908GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0005737GO:GO:0006351GO:GO:0009736GO:GO:0009873
GO:GO:0042991GO:GO:0048366Gramene:AT4G27950.1hmmpanther:PTHR31194
hmmpanther:PTHR31194:SF0HOGENOM:HOG000237664InParanoid:Q9SUE3IntAct:Q9SUE3
InterPro:IPR001471InterPro:IPR016177InterPro:IPR017392KEGG:ath:AT4G27950
OMA:DSFPLDIPANTHER:PTHR31194PaxDb:Q9SUE3Pfam:PF00847
Pfam:Q9SUE3Pfscan:PS51032PIR:T02896PRIDE:Q9SUE3
PRINTS:PR00367PRO:PR:Q9SUE3PROSITE:PS51032ProteinModelPortal:Q9SUE3
Proteomes:UP000006548RefSeq:NP_194524.2SMART:SM00380SMR:Q9SUE3
STRING:3702.AT4G27950.1SUPFAM:SSF54171TAIR:AT4G27950tair10-symbols:CRF4
UniGene:At.49716UniProt:Q9SUE3
Coordinates (TAIR10) chr4:-:13909732..13910739
Molecular Weight (calculated) 38449.60 Da
IEP (calculated) 4.36
GRAVY (calculated) -0.78
Length 335 amino acids
Sequence (TAIR10)
(BLAST)
001: MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR DATDSSSDEE EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)