AT5G48240.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1665 (InterPro:IPR012459); Has 402 Blast hits to 382 proteins in 162 species: Archae - 0; Bacteria - 4; Metazoa - 139; Fungi - 111; Plants - 54; Viruses - 1; Other Eukaryotes - 93 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:19559301..19561153 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 34480.40 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.33 | ||||||||||||||||||||||||
| GRAVY (calculated) | -1.16 | ||||||||||||||||||||||||
| Length | 309 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSTGEEGHMA MADRGSRKRR VGVKKGTKAA RNKKQKSKPS TSDRFKVTMK NQKLFQKRAR DYNSDDDEEE DDESKKQPEV TIREKIFSDA NMGPNYEEIG 101: EEDNDENSDG EDHGEIESGI TKFATDGCNA FKIAFKAIMK KTKGDDTLGP VLSAHKHLIG EKLAEDEAEK KAKGQARKAK HLIAEKGHVK PGSYLDSHEK 201: ILIGVATKGV VKLFNAVNKA QHAQKGLNPS RSKDAKVLKK RRKEAFLSEL GKTKTDTKAH KSEDEAPVWA PLRDNYMLAN PKLKDWDKKQ ETSEGDDFAG 301: LSGDESYED |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)