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AT1G49130.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : B-box type zinc finger protein with CCT domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
B-box type zinc finger protein with CCT domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT1G73870.1); Has 3177 Blast hits to 2366 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3069; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5641eggNOG:KOG1601EMBL:CP002684EnsemblPlants:AT1G49130
EnsemblPlants:AT1G49130.1entrez:841336ExpressionAtlas:F4I1N0GeneID:841336
GO:GO:0003700GO:GO:0005622GO:GO:0006355GO:GO:0008270
Gramene:AT1G49130.1hmmpanther:PTHR31874hmmpanther:PTHR31874:SF1InterPro:IPR000315
InterPro:IPR010402OMA:HAVWYCAPaxDb:F4I1N0Pfam:PF00643
Pfam:PF06203Pfscan:PS50119Pfscan:PS51017PROSITE:PS50119
PROSITE:PS51017Proteomes:UP000006548RefSeq:NP_175339.2SMART:SM00336
STRING:3702.AT1G49130.1TAIR:AT1G49130UniGene:At.38297UniProt:F4I1N0
Coordinates (TAIR10) chr1:-:18174741..18175936
Molecular Weight (calculated) 38318.70 Da
IEP (calculated) 6.43
GRAVY (calculated) -1.05
Length 326 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSHQNIKIS EKIMISKYQE DVKQPRACEL CLNKHAVWYC ASDDAFLCHV CDESVHSANH VATKHERVCL RTNEISNDVR GGTTLTSVWH SGFRRKARTP
101: RSRYEKKPQQ KIDDERRRED PRVPEIGGEV MFFIPEANDD DMTSLVPEFE GFTEMGFFLS NHNGTEETTK QFNFEEEADT MEDLYYNGEE EDKTDGAEAC
201: PGQYLMSCKK DYDNVITVSE KTEEIEDCYE NNARHRLNYE NVIAAWDKQE SPRDVKNNTS SFQLVPPGIE EKRVRSEREA RVWRYRDKRK NRLFEKKIRY
301: EVRKVNADKR PRMKGRFVRR SLAIDS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)