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AT2G36890.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Duplicated homeodomain-like superfamily protein
Curator
Summary (TAIR10)
Putative homolog of the Blind gene in tomato. Together with RAX1 and RAX3 belong to the class R2R3 MYB genes; encoded by the Myb-like transcription factor MYB38, regulates axillary meristem formation.
Computational
Description (TAIR10)
REGULATOR OF AXILLARY MERISTEMS 2 (RAX2); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 37 (TAIR:AT5G23000.1); Has 8785 Blast hits to 8145 proteins in 459 species: Archae - 0; Bacteria - 0; Metazoa - 710; Fungi - 476; Plants - 5916; Viruses - 4; Other Eukaryotes - 1679 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:AC006922EMBL:AF062880
EMBL:AY519577EMBL:CP002685EMBL:EF598636EMBL:EF598637
EMBL:EF598638EMBL:EF598639EMBL:EF598640EMBL:EF598641
EMBL:EF598642EMBL:EF598643EMBL:EF598644EMBL:EF598645
EMBL:EF598646EMBL:EF598647EMBL:EF598648EMBL:EF598649
EMBL:EF598650EMBL:EF598651EMBL:EF598652EMBL:EF598653
EMBL:EF598654EMBL:EF598655EMBL:EF598656EMBL:EF598657
EMBL:EF598658EMBL:EF598659EnsemblPlants:AT2G36890EnsemblPlants:AT2G36890.1
entrez:818262Gene3D:1.10.10.60GeneID:818262Genevisible:Q9SJL7
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0007275GO:GO:0009737GO:GO:0009739GO:GO:0009751
GO:GO:0009753GO:GO:0009785Gramene:AT2G36890.1hmmpanther:PTHR10641
hmmpanther:PTHR10641:SF519HOGENOM:HOG000237600InParanoid:Q9SJL7IntAct:Q9SJL7
InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT2G36890
KO:K09422OMA:SHYNMINPaxDb:Q9SJL7Pfam:PF00249
Pfam:Q9SJL7Pfscan:PS51294PhylomeDB:Q9SJL7PIR:H84785
PIR:T51652PRO:PR:Q9SJL7PROSITE:PS51294ProteinModelPortal:Q9SJL7
Proteomes:UP000006548RefSeq:NP_181226.1SMART:SM00717SMR:Q9SJL7
STRING:3702.AT2G36890.1SUPFAM:SSF46689TAIR:AT2G36890tair10-symbols:ATMYB38
tair10-symbols:BIT1tair10-symbols:MYB38tair10-symbols:RAX2UniGene:At.37491
UniProt:Q9SJL7
Coordinates (TAIR10) chr2:+:15485821..15487245
Molecular Weight (calculated) 34059.00 Da
IEP (calculated) 7.10
GRAVY (calculated) -0.81
Length 298 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRAPCCDKA NVKRGPWSPE EDAKLKDYIE KQGTGGNWIA LPHKAGLRRC GKSCRLRWLN YLRPNIRHGD FTEEEDNIIY SLFASIGSRW SVIAAHLQGR
101: TDNDIKNYWN TKLKKKLIAT MAPPPHHHLA IATSSSSASP SSSSHYNMIN SLLPYNPSTN QLLTPHQGIM MTMMGQQQQL FYQEDMGNLV NSPNRNNLIM
201: SHQEDNQEQS TNKGIMLLSD VRSGSSTTST VTRVKMEHRD HDDHHHHHEE DERSMTSVVM EDYGMEEIKQ LISSSCTSSN NSLWFDENKT EDKFMLYY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)