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AT5G44700.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Leucine-rich repeat transmembrane protein kinase
Curator
Summary (TAIR10)
Encodes GASSHO2 (GSO2), a putative leucine-rich repeat transmembrane-type receptor kinase. GSO2 and a homolog GSO1 (At4g20140) are required for the formation of a normal epidermal surface during embryogenesis.
Computational
Description (TAIR10)
GASSHO 2 (GSO2); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, transmembrane receptor protein tyrosine kinase signaling pathway, embryo sac development, embryo development, epidermis development; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT4G20140.1); Has 300710 Blast hits to 146614 proteins in 5000 species: Archae - 184; Bacteria - 28098; Metazoa - 99114; Fungi - 12121; Plants - 127107; Viruses - 448; Other Eukaryotes - 33638 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G44700-MONOMEREC:2.7.11.1eggNOG:COG0515eggNOG:COG4886
eggNOG:ENOG410IJJKEMBL:AB016874EMBL:CP002688EnsemblPlants:AT5G44700
EnsemblPlants:AT5G44700.1entrez:834499Gene3D:2.60.120.200Gene3D:3.80.10.10
GeneID:834499Genevisible:Q9FIZ3GO:GO:0004674GO:GO:0005524
GO:GO:0009553GO:GO:0009793GO:GO:0016021GO:GO:0090558
hmmpanther:PTHR27000hmmpanther:PTHR27000:SF86HOGENOM:HOG000116551InParanoid:Q9FIZ3
InterPro:IPR000719InterPro:IPR001611InterPro:IPR003591InterPro:IPR008271
InterPro:IPR011009InterPro:IPR013210InterPro:IPR013320InterPro:IPR017441
InterPro:IPR032675KEGG:ath:AT5G44700OMA:IMEATHYPaxDb:Q9FIZ3
Pfam:PF00069Pfam:PF08263Pfam:PF13855Pfam:Q9FIZ3
Pfscan:PS50011Pfscan:PS51450PhylomeDB:Q9FIZ3PRIDE:Q9FIZ3
PRO:PR:Q9FIZ3PROSITE:PS00107PROSITE:PS00108PROSITE:PS50011
PROSITE:PS51450ProteinModelPortal:Q9FIZ3Proteomes:UP000006548RefSeq:NP_199283.1
scanprosite:PS00107scanprosite:PS00108SMART:SM00220SMART:SM00369
SMR:Q9FIZ3STRING:3702.AT5G44700.1SUPFAM:SSF52047SUPFAM:SSF52058
SUPFAM:SSF56112TAIR:AT5G44700tair10-symbols:EDA23tair10-symbols:GSO2
TMHMM:TMhelixUniGene:At.7718UniProt:Q9FIZ3
Coordinates (TAIR10) chr5:-:18033049..18036894
Molecular Weight (calculated) 137540.00 Da
IEP (calculated) 5.22
GRAVY (calculated) -0.14
Length 1252 amino acids
Sequence (TAIR10)
(BLAST)
0001: MQQNSVLLAL FFLCFSSGLG SGQPGQRDDL QTLLELKNSF ITNPKEEDVL RDWNSGSPSY CNWTGVTCGG REIIGLNLSG LGLTGSISPS IGRFNNLIHI
0101: DLSSNRLVGP IPTTLSNLSS SLESLHLFSN LLSGDIPSQL GSLVNLKSLK LGDNELNGTI PETFGNLVNL QMLALASCRL TGLIPSRFGR LVQLQTLILQ
0201: DNELEGPIPA EIGNCTSLAL FAAAFNRLNG SLPAELNRLK NLQTLNLGDN SFSGEIPSQL GDLVSIQYLN LIGNQLQGLI PKRLTELANL QTLDLSSNNL
0301: TGVIHEEFWR MNQLEFLVLA KNRLSGSLPK TICSNNTSLK QLFLSETQLS GEIPAEISNC QSLKLLDLSN NTLTGQIPDS LFQLVELTNL YLNNNSLEGT
0401: LSSSISNLTN LQEFTLYHNN LEGKVPKEIG FLGKLEIMYL YENRFSGEMP VEIGNCTRLQ EIDWYGNRLS GEIPSSIGRL KDLTRLHLRE NELVGNIPAS
0501: LGNCHQMTVI DLADNQLSGS IPSSFGFLTA LELFMIYNNS LQGNLPDSLI NLKNLTRINF SSNKFNGSIS PLCGSSSYLS FDVTENGFEG DIPLELGKST
0601: NLDRLRLGKN QFTGRIPRTF GKISELSLLD ISRNSLSGII PVELGLCKKL THIDLNNNYL SGVIPTWLGK LPLLGELKLS SNKFVGSLPT EIFSLTNILT
0701: LFLDGNSLNG SIPQEIGNLQ ALNALNLEEN QLSGPLPSTI GKLSKLFELR LSRNALTGEI PVEIGQLQDL QSALDLSYNN FTGRIPSTIS TLPKLESLDL
0801: SHNQLVGEVP GQIGDMKSLG YLNLSYNNLE GKLKKQFSRW QADAFVGNAG LCGSPLSHCN RAGSKNQRSL SPKTVVIISA ISSLAAIALM VLVIILFFKQ
0901: NHDLFKKVRG GNSAFSSNSS SSQAPLFSNG GAKSDIKWDD IMEATHYLNE EFMIGSGGSG KVYKAELKNG ETIAVKKILW KDDLMSNKSF NREVKTLGTI
1001: RHRHLVKLMG YCSSKADGLN LLIYEYMANG SVWDWLHANE NTKKKEVLGW ETRLKIALGL AQGVEYLHYD CVPPIVHRDI KSSNVLLDSN IEAHLGDFGL
1101: AKILTGNYDT NTESNTMFAG SYGYIAPEYA YSLKATEKSD VYSMGIVLME IVTGKMPTEA MFDEETDMVR WVETVLDTPP GSEAREKLID SELKSLLPCE
1201: EEAAYQVLEI ALQCTKSYPQ ERPSSRQASE YLLNVFNNRA ASYREMQTDT DK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)