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AT5G47530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.880
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Auxin-responsive family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Auxin-responsive family protein; CONTAINS InterPro DOMAIN/s: Cytochrome b561, eukaryote (InterPro:IPR004877), Uncharacterised conserved protein UCP037471 (InterPro:IPR017214), Protein of unknown function DUF568, DOMON-like (InterPro:IPR007613), DOMON related (InterPro:IPR005018), Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593); BEST Arabidopsis thaliana protein match is: Auxin-responsive family protein (TAIR:AT4G17280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:20051eggNOG:ENOG410ISUDeggNOG:ENOG410ZKV6EMBL:AB025628
EMBL:AK176454EMBL:BT012551EMBL:CP002688EnsemblPlants:AT5G47530
EnsemblPlants:AT5G47530.1entrez:834803GeneID:834803Genevisible:Q9FGK4
GO:GO:0016021GO:GO:0046872GO:GO:0055114Gramene:AT5G47530.1
hmmpanther:PTHR23130hmmpanther:PTHR23130:SF80HOGENOM:HOG000239819InParanoid:Q9FGK4
InterPro:IPR005018InterPro:IPR006593InterPro:IPR017214KEGG:ath:AT5G47530
OMA:CLATIQVPaxDb:Q9FGK4Pfam:PF03188Pfam:PF04526
Pfam:Q9FGK4Pfscan:PS50836Pfscan:PS50939PhylomeDB:Q9FGK4
PIRSF:PIRSF037471PRIDE:Q9FGK4PRO:PR:Q9FGK4PROSITE:PS50836
PROSITE:PS50939ProteinModelPortal:Q9FGK4Proteomes:UP000006548RefSeq:NP_199564.1
SMART:SM00665STRING:3702.AT5G47530.1TAIR:AT5G47530TMHMM:TMhelix
UniGene:At.66684UniGene:At.7964UniProt:Q9FGK4
Coordinates (TAIR10) chr5:+:19281471..19282870
Molecular Weight (calculated) 42999.90 Da
IEP (calculated) 9.83
GRAVY (calculated) 0.21
Length 395 amino acids
Sequence (TAIR10)
(BLAST)
001: MAISSNLLLC LSLFIFIITK SALAQKCSNY KFSTNRLFES CNDLPVLDSF LHYTYDSSSG NLQIAYRHTK LTPGKWVAWA VNPTSTGMVG AQAIVAYPQS
101: DGTVRAYTSP ISSYQTSLLE AELSFNVSQL SATYQNNEMV IYAILNLPLA NGGIINTVWQ DGSLSGNNPL PHPTSGNNVR SVSTLNLVSG ASGSTSTGAG
201: GASKLRKRNI HGILNGVSWG IMMPIGAIIA RYLKVSKSAD PAWFYLHVFC QSSAYIIGVA GWATGLKLGN ESAGIQFTFH RAVGIALFCL ATIQVFAMFL
301: RPKPEHKYRV YWNIYHHTVG YSVIILAVVN VFKGLDILSP EKQWRNAYTA IIVVLGIVAV VLEGFTWYVV IKRGKAEASA KTSQRVGNDG RSLYV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)