suba logo
AT4G17280.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Auxin-responsive family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Auxin-responsive family protein; CONTAINS InterPro DOMAIN/s: Cytochrome b561, eukaryote (InterPro:IPR004877), Uncharacterised conserved protein UCP037471 (InterPro:IPR017214), Protein of unknown function DUF568, DOMON-like (InterPro:IPR007613), DOMON related (InterPro:IPR005018), Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593); BEST Arabidopsis thaliana protein match is: Auxin-responsive family protein (TAIR:AT5G47530.1); Has 707 Blast hits to 703 proteins in 123 species: Archae - 1; Bacteria - 11; Metazoa - 103; Fungi - 98; Plants - 467; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Protein Annotations
BioGrid:12735eggNOG:ENOG410ISUDeggNOG:ENOG410ZKV6EMBL:AL161546
EMBL:AY072011EMBL:BT002717EMBL:CP002687EMBL:Z97343
EnsemblPlants:AT4G17280EnsemblPlants:AT4G17280.1entrez:827442GeneID:827442
Genevisible:Q8VYH6GO:GO:0016021GO:GO:0046872GO:GO:0055114
Gramene:AT4G17280.1hmmpanther:PTHR23130hmmpanther:PTHR23130:SF80HOGENOM:HOG000239819
InParanoid:Q8VYH6InterPro:IPR005018InterPro:IPR006593InterPro:IPR017214
KEGG:ath:AT4G17280OMA:HIAYRHTPaxDb:Q8VYH6Pfam:PF03188
Pfam:PF04526Pfam:Q8VYH6Pfscan:PS50836Pfscan:PS50939
PhylomeDB:Q8VYH6PIR:H71441PIRSF:PIRSF037471PRIDE:Q8VYH6
PRO:PR:Q8VYH6PROSITE:PS50836PROSITE:PS50939ProteinModelPortal:Q8VYH6
Proteomes:UP000006548RefSeq:NP_193461.5SMART:SM00665STRING:3702.AT4G17280.1
TAIR:AT4G17280TMHMM:TMhelixUniGene:At.48869UniGene:At.63700
UniProt:Q8VYH6
Coordinates (TAIR10) chr4:-:9678887..9680277
Molecular Weight (calculated) 43681.90 Da
IEP (calculated) 10.15
GRAVY (calculated) 0.18
Length 402 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNHMSIMKF LNQILCLSLI LSISMTTLSF AQTCSKYKFS SNNVFDSCND LPFLDSFLHY TYESSTGSLH IAYRHTKLTS GKWVAWAVNP TSTGMVGAQA
101: IVAYPQSDGT VRVYTSPIRS YQTSLLEGDL SFNVSGLSAT YQNNEIVVLA SLKLAQDLGN GGTINTVWQD GSMSGNSLLP HPTSGNNVRS VSTLNLVSGV
201: SAAAGGAGGS SKLRKRNIHG ILNGVSWGIM MPLGAIIARY LRVAKSADPA WFYIHVFCQA SAYIIGVAGW ATGLKLGGDS PGIQYSTHRA IGIALFSLAT
301: VQVFAMFLRP KPEHKHRLYW NIYHHTIGYT IIILGVVNVF KGLGILSPKK QWKNAYIGII VVLAIVATLL EAFTWYVVIK RRKLEAKTAQ HGASNGTRSQ
401: YA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)