AT2G22620.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Rhamnogalacturonate lyase family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Rhamnogalacturonate lyase family protein; FUNCTIONS IN: lyase activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Rhamnogalacturonate lyase (InterPro:IPR010325), Carbohydrate-binding-like fold (InterPro:IPR013784), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein (TAIR:AT4G37950.1); Has 306 Blast hits to 289 proteins in 68 species: Archae - 0; Bacteria - 51; Metazoa - 0; Fungi - 87; Plants - 167; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:9604902..9610156 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 77622.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.01 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.45 | ||||||||||||||||||||||||||||||||||||||||
| Length | 677 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKVGAPASKP GRIIVQVFLL QLLLLLQSVH SQRSQNKLNI TKPGQNIPAL TVQLRRVGHD TVVVDNGIVQ VTFSNPEGLI TGIKYHGIDN VLDDKIDDRG 101: YWDVVWYEPE KKQKTDKLEG TKFEIITQNE EQIEISFTRT WTISRRGSLV PLNVDKRYII RSGVSGLYMY GILERLEGWP DVDMDQIRIV FKLNPKKFDF 201: MAISDDRQRS MPSMADRENS KSLAYKEAVL LTNPSNPMFK GEVDDKYMYS MEDKDNNVHG WISSDPPVGF WMITPSDEFR LGGPIKQDLT SHAGPITLSM 301: FTSTHYAGKE MRMDYRNGEP WKKVFGPVLA YLNSVSPKDS TLRLWRDAKR QMAAEVKSWP YDFITSEDYP LRHQRGTLEG QFLIKDSYVS RLKIYGKFAF 401: VGLAPIGEAG SWQTESKGYQ FWTKADRRGR FIIENVRAGN YSLYAWGSGF IGDYKYEQNI TITPGSEMNV GPLVYEPPRN GPTLWEIGVP DRTAGEFYIP 501: DPYPTLMNKL YVNPLQDRFR QYGLWDRYAD LYPQNDLVYT IGVSDYRSDW FFAHVARNVG NDTYQPTTWQ IIFNLKNVNR IGRYTLRIAL ASAADSELQI 601: RINDPKSDAI FTTGFIGKDN AIARHGIHGL YRLYSIDVAG NLLSVGDNTI FLTQTRSRTP FQGIMYDYIR LESPFRT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)