AT2G40160.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.859 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Plant protein of unknown function (DUF828) | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication). | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
TBL30; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stem, leaf whorl, hypocotyl, root, leaf; EXPRESSED DURING: LP.02 two leaves visible; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT3G55990.1); Has 1330 Blast hits to 1307 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1330; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:+:16777448..16779063 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50015.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.96 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.54 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 427 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKQTDGRERK AYLSLLYFAV ILLPVFLLGC YLYNEKQLRV GQFQEFNTHN LQEHITPLQQ SKEDKDKKTD LVPLEFCDVF TGKWVLDNVT HPLYKEDECE 101: FLSEWVACTR NGRPDSKYQK WRWQPQDCSL PRFDSKLLLE KLRGKKLMFI GDSIHYNQWQ SMVCMVQSVI PSGKKTLKHT AQMSIFNIEE YNATISFYWA 201: PFLVESNADP PDKRDGKTDP VIIPNSISKH GENWKDADYL IFNTYIWWTR HSTIKVLKQE SFNKGDSKEY NEIGIYIVYK QVLSTWTKWL EQNINPSQTS 301: IFFSSMSPTH IRSSDWGFNE GSKCEKETEP ILNMSKPINV GTNRRLYEIA LNATKSTKVP IHFLNITTMS EYRKDGHTSF YGSINGKLMT PEQKLDPRTF 401: ADCYHWCLPG LPDSWNELLS LYIIYKI |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)