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AT3G53510.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.979
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ABC-2 type transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ABC-2 type transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Pigment precursor permease (InterPro:IPR005284), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC-2 type transporter family protein (TAIR:AT2G37360.1); Has 392871 Blast hits to 356829 proteins in 4146 species: Archae - 6979; Bacteria - 312762; Metazoa - 8946; Fungi - 6247; Plants - 5690; Viruses - 12; Other Eukaryotes - 52235 (source: NCBI BLink).
Protein Annotations
BioGrid:9836eggNOG:COG1131eggNOG:KOG0061EMBL:AK228064
EMBL:AL132966EMBL:CP002686EnsemblPlants:AT3G53510EnsemblPlants:AT3G53510.1
entrez:824519Gene3D:3.40.50.300GeneID:824519Genevisible:Q9LFG8
GO:GO:0005524GO:GO:0005886GO:GO:0010345GO:GO:0016021
GO:GO:0042626GO:GO:0055085Gramene:AT3G53510.1hmmpanther:PTHR19241
hmmpanther:PTHR19241:SF180HOGENOM:HOG000238446InParanoid:Q9LFG8InterPro:IPR003439
InterPro:IPR003593InterPro:IPR013525InterPro:IPR017871InterPro:IPR027417
KEGG:ath:AT3G53510MINT:MINT-8065494OMA:GIQMFDNPaxDb:Q9LFG8
Pfam:PF00005Pfam:PF01061Pfam:Q9LFG8Pfscan:PS50893
PhylomeDB:Q9LFG8PIR:T45891PRIDE:Q9LFG8PRO:PR:Q9LFG8
PROSITE:PS00211PROSITE:PS50893ProteinModelPortal:Q9LFG8Proteomes:UP000006548
RefSeq:NP_190919.1scanprosite:PS00211SMART:SM00382SMR:Q9LFG8
STRING:3702.AT3G53510.1SUPFAM:SSF52540TAIR:AT3G53510TMHMM:TMhelix
UniGene:At.35188UniProt:Q9LFG8
Coordinates (TAIR10) chr3:-:19837302..19839521
Molecular Weight (calculated) 82093.60 Da
IEP (calculated) 9.46
GRAVY (calculated) 0.13
Length 739 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGLFGILSP AKRVNGDGLP LFYNIHKSVE LQRCHRDTAR VSVTLAELLM SVEDEGDDQS RAMDIAVASN FWSSVPSSRV PSSSPFVLSF KDLTYSVKIK
101: KKFKPFPCCG NSPFDGNDME MNTKVLLNGI SGEAREGEMM AVLGASGSGK STLIDALANR ISKESLRGDI TLNGEVLESS LHKVISAYVM QDDLLFPMLT
201: VEETLMFSAE FRLPSSLSKK KKKARVQALI DQLGLRNAAK TVIGDEGHRG VSGGERRRVS IGTDIIHDPI ILFLDEPTSG LDSTSAYMVV KVLQRIAQSG
301: SIVIMSIHQP SYRILGLLDK LIFLSRGNTV YSGSPTHLPQ FFSEFGHPIP ENENKPEFAL DLIRELEDSP EGTKSLVEFH KQWRAKQTSS QSRRNTNVSL
401: KDAISASISR GKLVSGATNL RSSFQTFANP FWTEMLVIGK RSILNSRRQP ELFGIRLGAV LVTGMILATI FWKLDNSPRG IQERLGFFAF AMSTTFYTCA
501: EAIPVFLQER YIFMRETAYN AYRRSSYVLA HTIISIPALI ILSAAFAAST FSAVGLAGGS EGFLFFFFTI LTAFWAGSSF VTFLSGVVSH VMIGFTVVVA
601: ILAYFLLFSG FFISRDRIPL YWIWFHYLSL VKYPYEGVLQ NEFEDPTKCF VRGIQMFDNS PLGQVPTAVK ISLLKSMSGV LGINVTAETC VTTGIDILKQ
701: QGITEISKWN CLWITVAWGF FFRVLFYFTL LIGSKNKRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)