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AT4G29658.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.695
What is SUBAcon?
Predictors External Curations
AdaBoost: plasma membraneBaCelLo: nucleusiPSORT: endoplasmic reticulumiPSORT: extracellular
iPSORT: golgiMitoprot 2: mitochondrionMultiLoc: extracellularPlant-mPloc: nucleus
Plant-mPloc: plasma membranePlant-mPloc: plastidPredotar: endoplasmic reticulumPredotar: extracellular
Predotar: golgiPredSL: endoplasmic reticulumPredSL: extracellularPredSL: golgi
PProwler: endoplasmic reticulumPProwler: extracellularPProwler: golgiSLPFA: endoplasmic reticulum
SLPFA: extracellularSLPFA: golgiSLP-Local: endoplasmic reticulumSLP-Local: extracellular
SLP-Local: golgiSubLoc: extracellularTargetP: endoplasmic reticulumTargetP: extracellular
TargetP: golgiWoLF PSORT: plasma membraneYLoc: plasma membrane
 AmiGO : endoplasmic reticulum 18583532
SwissProt : endoplasmic reticulum 16381842
TAIR : endoplasmic reticulum 18583532
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : prenylated RAB acceptor 1.C
Curator
Summary (TAIR10)
Computational
Description (TAIR10)		 prenylated RAB acceptor 1.C (PRA1.C); CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: PRA1 (Prenylated rab acceptor) family protein (TAIR:AT1G55190.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
BioGrid:530918eggNOG:COG5130eggNOG:KOG3142EMBL:AL079344
EMBL:AL161575EMBL:CP002687EMBL:DQ487577EMBL:EF182903
EnsemblPlants:AT4G29658EnsemblPlants:AT4G29658.1entrez:3770557GeneID:3770557
GO:GO:0005783GO:GO:0005789GO:GO:0016021GO:GO:0016192
Gramene:AT4G29658.1hmmpanther:PTHR19317hmmpanther:PTHR19317:SF2InParanoid:Q1G3K7
InterPro:IPR004895KEGG:ath:AT4G29658PaxDb:Q1G3K7Pfam:PF03208
Pfam:Q1G3K7PhylomeDB:Q1G3K7PIR:T09929PRIDE:Q1G3K7
PRO:PR:Q1G3K7Proteomes:UP000006548RefSeq:NP_001031750.1STRING:3702.AT4G29658.1
TAIR:AT4G29658tair10-symbols:PRA1.CTMHMM:TMhelixUniGene:At.65432
UniProt:Q1G3K7
Coordinates (TAIR10) chr4:-:14533447..14533830
Molecular Weight (calculated) 14210.70 Da
IEP (calculated) 4.44
GRAVY (calculated) 1.02
Length 127 amino acids
Sequence (TAIR10)
(BLAST) 		001: MIFRTNYIVI FIVSIFISML WQPVHLSVFV ILIVAWLYVY SRDNEPWVIF GSVIDDSTLV LVLLVLTIGI FLLTDVSRGI VIGVLAGLPV VLVHGMCRRN
101: TEMLFVLEDD EEKVAMNTSS SSLSSSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)