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AT1G53270.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ABC-2 type transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ABC-2 type transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; LOCATED IN: membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC-2 type transporter family protein (TAIR:AT2G13610.1); Has 412109 Blast hits to 371848 proteins in 4161 species: Archae - 7411; Bacteria - 324065; Metazoa - 9151; Fungi - 7073; Plants - 5804; Viruses - 6; Other Eukaryotes - 58599 (source: NCBI BLink).
Protein Annotations
BioGrid:26986eggNOG:COG1131eggNOG:KOG0061EMBL:AC008007
EMBL:CP002684EnsemblPlants:AT1G53270EnsemblPlants:AT1G53270.1entrez:841761
Gene3D:3.40.50.300GeneID:841761Genevisible:Q9MAH4GO:GO:0005524
GO:GO:0005886GO:GO:0016021GO:GO:0042626GO:GO:0055085
Gramene:AT1G53270.1hmmpanther:PTHR19241hmmpanther:PTHR19241:SF182HOGENOM:HOG000238446
InParanoid:Q9MAH4InterPro:IPR003439InterPro:IPR003593InterPro:IPR013525
InterPro:IPR017871InterPro:IPR027417iPTMnet:Q9MAH4KEGG:ath:AT1G53270
ncoils:CoilOMA:MINEYRGPaxDb:Q9MAH4Pfam:PF00005
Pfam:PF01061Pfam:Q9MAH4Pfscan:PS50893PhylomeDB:Q9MAH4
PIR:B96573PRIDE:Q9MAH4PRO:PR:Q9MAH4PROSITE:PS00211
PROSITE:PS50893ProteinModelPortal:Q9MAH4Proteomes:UP000006548RefSeq:NP_175734.1
scanprosite:PS00211SMART:SM00382SMR:Q9MAH4STRING:3702.AT1G53270.1
SUPFAM:SSF52540TAIR:AT1G53270TMHMM:TMhelixUniGene:At.66897
UniProt:Q9MAH4
Coordinates (TAIR10) chr1:+:19862878..19864650
Molecular Weight (calculated) 66208.20 Da
IEP (calculated) 9.83
GRAVY (calculated) 0.12
Length 590 amino acids
Sequence (TAIR10)
(BLAST)
001: MELPVKAPIP GGREISYRLE TKNLSYRIGG NTPKFSNLCG LLSEKEEKVI LKDVSCDARS AEITAIAGPS GAGKTTLLEI LAGKVSHGKV SGQVLVNGRP
101: MDGPEYRRVS GFVPQEDALF PFLTVQETLT YSALLRLKTK RKDAAAKVKR LIQELGLEHV ADSRIGQGSR SGISGGERRR VSIGVELVHD PNVILIDEPT
201: SGLDSASALQ VVTLLKDMTI KQGKTIVLTI HQPGFRILEQ IDRIVLLSNG MVVQNGSVYS LHQKIKFSGH QIPRRVNVLE YAIDIAGSLE PIRTQSCREI
301: SCYGHSKTWK SCYISAGGEL HQSDSHSNSV LEEVQILGQR SCKNIFRTKQ LFTTRALQAS IAGLILGSIY LNVGNQKKEA KVLRTGFFAF ILTFLLSSTT
401: EGLPIFLQDR RILMRETSRR AYRVLSYVLA DTLIFIPFLL IISMLFATPV YWLVGLRREL DGFLYFSLVI WIVLLMSNSF VACFSALVPN FIMGTSVISG
501: LMGSFFLFSG YFIAKDRIPV YWEFMHYLSL FKYPFECLMI NEYRGDVFLK QQDLKESQKW SNLGIMASFI VGYRVLGFFI LWYRCYRTRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)