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AT4G30560.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.679
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cyclic nucleotide gated channel 9
Curator
Summary (TAIR10)
member of Cyclic nucleotide gated channel family
Computational
Description (TAIR10)
cyclic nucleotide gated channel 9 (CNGC9); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: potassium ion transport, ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: cyclic nucleotide-gated channel 6 (TAIR:AT2G23980.1); Has 3647 Blast hits to 3476 proteins in 272 species: Archae - 0; Bacteria - 61; Metazoa - 1611; Fungi - 53; Plants - 1017; Viruses - 0; Other Eukaryotes - 905 (source: NCBI BLink).
Protein Annotations
BioGrid:14466eggNOG:ENOG410XPSEeggNOG:KOG0498EMBL:AL161577
EMBL:CP002687EnsemblPlants:AT4G30560EnsemblPlants:AT4G30560.1entrez:829179
ExpressionAtlas:Q9M0A4Gene3D:2.60.120.10GeneID:829179Genevisible:Q9M0A4
GO:GO:0005249GO:GO:0005886GO:GO:0016020GO:GO:0016021
GO:GO:0030552GO:GO:0030553GO:GO:0042391GO:GO:0071805
hmmpanther:PTHR10217hmmpanther:PTHR10217:SF500HOGENOM:HOG000238338InParanoid:Q9M0A4
InterPro:IPR000048InterPro:IPR000595InterPro:IPR003938InterPro:IPR005821
InterPro:IPR014710InterPro:IPR018490iPTMnet:Q9M0A4OMA:IFIQAAW
PaxDb:Q9M0A4Pfam:PF00027Pfam:PF00520Pfam:Q9M0A4
Pfscan:PS50042Pfscan:PS50096PhylomeDB:Q9M0A4PIR:E85357
PRIDE:Q9M0A4PRINTS:PR01463PRO:PR:Q9M0A4PROSITE:PS50042
PROSITE:PS50096ProteinModelPortal:Q9M0A4Proteomes:UP000006548Reactome:R-ATH-2485179
Reactome:R-ATH-2514859Reactome:R-ATH-5620916RefSeq:NP_194785.1SMART:SM00100
SMR:Q9M0A4STRING:3702.AT4G30560.1SUPFAM:SSF51206SUPFAM:SSF81324
TAIR:AT4G30560tair10-symbols:ATCNGC9tair10-symbols:CNGC9TMHMM:TMhelix
UniGene:At.54558UniProt:Q9M0A4
Coordinates (TAIR10) chr4:-:14926974..14929681
Molecular Weight (calculated) 83628.50 Da
IEP (calculated) 9.85
GRAVY (calculated) -0.12
Length 733 amino acids
Sequence (TAIR10)
(BLAST)
001: MLDCGKKAVK SQVISGRLEK FVRLDSMDSR YSQTSDTGLN RCTLNLQGPT RGGGAQGNNV SSGSFKKGFR KGSKGLWSIG RSIGLGVSRA VFPEDLKVSE
101: KKIFDPQDKF LLLCNKLFVT SCILAVSVDP LFLYLPFVKD NEKCIGIDRK LAIIATTLRT VIDAFYLFHM ALRFRTAFVA PSSRVFGRGE LVIDPAQIAK
201: RYLQQYFIID FLSVLPLPQI VVWRFLYISK GASVLATKRA LRSIILVQYI PRFIRLYPLS SELKRTAGVF AETAWAGAAY YLLLYMLASH IVGAIWYLLA
301: LERYNGCWTK VCSNSSLDCH RNFLFCGNEK MDGYAAWTTI KDSVLQLNCP VNTTDNPPFD FGIYLRALSS GIVSSKSFVS KYFFCLWWGL QNLSTLGQGL
401: ETSTYPGEVI FSIALAIAGL LLFALLIGNM QTYLQSLTIR LEEMRVKRRD SEQWMHHRML PPELRERVRR YDQYKWLETR GVDEENLVQN LPKDLRRDIK
501: RHLCLALVRR VPLFENMDER LLDAICERLK PCLYTESSYL VREGDPVNEM LFIIRGRLES VTTDGGRSGF FNRSLLKEGD FCGEELLTWA LDPKSGSNLP
601: SSTRTAKALT EVEAFALIAD ELKFVASQFR RLHSRQVQHT FRFYSQQWRT WAAIFIQAAW RRYVKKKKLE QLRKEEEEGE GSVTSIRATF LASKFAANAL
701: RKVHKNRIEA KSTIELVKYQ KPSEPDFSAD DTS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)