AT1G31820.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.939 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Amino acid permease family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Amino acid permease family protein; FUNCTIONS IN: cationic amino acid transmembrane transporter activity; INVOLVED IN: transport, amino acid transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease domain (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: Amino acid permease family protein (TAIR:AT1G31830.1); Has 24659 Blast hits to 24648 proteins in 2148 species: Archae - 328; Bacteria - 21417; Metazoa - 747; Fungi - 1081; Plants - 444; Viruses - 0; Other Eukaryotes - 642 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:11416691..11418139 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52602.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.64 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.65 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 482 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGDYNMNEFA YGNLYDDDDG DVGGSSKEGN NSIQKVSMLP LVFLIFYEVS GGPFGAEGSV NAAGPLLALL GFVIFPFIWC IPEALITAEM STMFPINGGF 101: VVWVSSALGT FWGFQVGWMK WLCGVIDNAL YPVLFLDYLK SAVPALATGL PRVASILILT LLLTYLNYRG LTIVGWTAVF MGVFSMLPFA VMSLVSIPQL 201: EPSRWLVMDL GNVNWNLYLN TLLWNLNYWD SVSTLAGEVA NPKKTLPKAL CYGVIFVALS NFLPLLSGTG AIPLDRELWT DGYLAEVAKA IGGGWLQLWV 301: QAAAATSNMG MFLAEMSSDS FQLLGMAELG ILPEIFAQRS RYGTPLLGIL FSASGVLLLS GLSFQEIIAA ENLLYCGGMI LEFIAFVRLR KKHPAASRPY 401: KIPVGTVGSI LICVPPIVLI CLVIVLSTIK VALVSFVMVV IGFLMKPCLN HMDGKKWVKF SVCSDLAEFQ KENLDCEESL LR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)